Statistical indicators of collective behavior and functional clusters in gene networks of yeast

European Physical Journal B

Volumn 50, Issue 1-2, 2006, Pages 255-258

  Zivkovic J ^a   Tadic B ^b   Wick, N ^a   Thurner, S ^a  

^a MEDICAL UNIVERSITY OF VIENNA   (Austria)

^b JO EF STEFAN INSTITUTE   (Slovenia)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; CORRELATION THEORY; DATA REDUCTION; GENETIC ENGINEERING; TIME SERIES ANALYSIS; TREES (MATHEMATICS);

GENE EXPRESSION RANKING; GENE INTERACTION NETWORKS; PERCOLATION POINT; SPANNING TREES;

GENES;

EID: 33645899988     PISSN: 14346028     EISSN: 14346036     Source Type: Journal    
DOI: 10.1140/epjb/e2006-00103-4     Document Type: Conference Paper

References (14)

1. S. Tavazoie, J.D. Hughes, M.J. Campbell, R.J. Cho, G.M. Church, Nature Genet. 22, 281 (1999);
2. W. Wang, J.M. Cherry, D. Botstein, H. Li, Proc. Natl. Acad. Sci. 99, 16893 (2002);
3. K. Rho, H. Jeong, B. Kahng, e-print arXiv:cond-mat/0301110;
4. F. Li, T. Long, Y. Lu, Q. Ouyang, C. Tang, Proc. Natl. Acad. Sci. 101, 4781 (2004);
5. D. Balcan, A. Erzan, Eur. Phys. J. B 38, 253 (2004)
6. R.J. Cho, Campbell, et al., Molecular Cell. 2 65 (1998); http://arep.med.harvard.edu/cgi-bin/ExpressDByeast
7. http://mips.gsf.de
8. C. Tsallis, J. Stat. Phys. 52, 479 (1988)
9. G.K. Zipf, Psycho-Biology of Languages (Houghton-Mifflin, 1935; MIT Press, 1965)
10. C. Furusawa, K. Kaneko, Phys. Rev. Lett. 90, 088102 (2003)
11. M. Argollo de Menezes, A.-L. Barabasi, Phys. Rev. Lett. 92, 028701 (2004)
12. S.N. Dorogovtsev, J.F.F. Mendes, Evolution of Networks (Oxford Univ. Press, 2003)
13. G. Bonanno, G. Caldarelli, F. Lillo, R.N. Mantegna, e-print arXiv:cond-mat/0211546 (2002)
14. In the available data-bases of yeast, apart from genes with unknown functions, often multiple functions can be assigned to a single gene. To keep one color of each gene we select the first listed function in the database. We also have grouped several fuctions related to protein synthesis to a single one in order to keep the number of colors visually distinguishable