Unraveling the sequence and structure of the protein osteocalcin from a 42 ka fossil horse

Geochimica et Cosmochimica Acta

Volumn 70, Issue 8, 2006, Pages 2034-2044

  Ostrom, Peggy H ^a   Gandhi, Hasand ^a   Strahler, John R ^b   Walker, Angela K ^b   Andrews, Philip C ^b   Leykam, Joseph ^c   Stafford, Thomas W ^d   Kelly, Robert L ^e   Walker, Danny N ^f   Buckley, Mike ^g   Humpula, James ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^c Michigan State University   (United States)

^d Stafford Research Laboratories   (United States)

^e UNIVERSITY OF WYOMING   (United States)

^f NONE

^g UNIVERSITY OF YORK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AGING; AMINO ACID; FOSSILIZATION; MASS SPECTROMETRY; PROTEIN; TRACE FOSSIL;

EQUIDAE; EQUUS ASINUS; EQUUS CABALLUS; EQUUS GREVYI; JUNIPERUS;

EID: 33645884095     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2006.01.004     Document Type: Article

References (25)

1. Carstanjen B., Wattiez R., Armory H., Lepage O.M., and Remy B. Isolation and characterization of equine osteocalcin. Ann. Med. Vet. 146 1 (2002) 31-38
2. Clarke S. Aging as war between chemical and biochemical processes: protein methylation and the recognition of age damaged proteins for repair. Ageing Res. Rev. 2 (2003) 263-285
3. Collins M.J., Gernaey A.M., Nielsen-Marsh C.M., Vermeer C., and Westbroek P. Osteocalcin in fossil bones: evidence of very slow rates of decomposition from laboratory studies. Geology 28 (2000) 1139-1142
4. Cooper A., and Poinar H.N. Ancient DNA: do it right or not at all. Science 289 (2000) 1139
5. Gundberg C.M., and Weinstein R.S. Multiple immunoreactive forms of osteocalcin in uremic serum. J. Clin. Invest. 77 (1986) 1762-1767
6. Hadley E.A., Ramakrishnan U., Chan Y.L., van Tuinen M., O'Keefe K., Spaeth P.A., and Conroy C.J. Genetic response to climatic change: Insights from ancient DNA and phylochronology. PLoS Biol. 2 10 (2004) 1600-1609
7. Hauschka P.V., Lian J.B., Cole D.E., and Gundberb C.M. Osteocalcin and matrix Gla protein: vitamin K-dependent proteins in bone. Physiol. Rev. 69 (1989) 990-1047
8. Hoang Q.Q., Sicheri F., Howard A.J., and Yang D.S.C. Bone recognition mechanism of porcine osteocalcin from crystal structure. Nature 425 (2003) 977-980
9. Huq N.L., Ten L.C., Christie D.L., and Chapman G.E. The amino acid sequences of goat, pig, and wallaby osteocalcins. Biochem. Int. 8 (1984) 521-527
10. Kelly, R.L., Prasciunas, M., Walker, D.N., Finley, J., Weathermon, R., 2002. Report on 2002 activities at Juniper Cave, 48BH3178. Report submitted to the BLM, Cody District in fulfillment of BLM Task Order TO-5, agreement number KAA990012, pp. 39.
11. Leonard J.A., Wayne R.K., and Cooper A. Population genetics of ice age brown bears. Proc. Natl. Acad. Sci. USA 97 (2000) 1651-1654
12. Linde J.B., Bhown M., and Butler W.T. Noncollagenous proteins of dentin: A re-examination of proteins from rat incisor dentin utilizing techniques to avoid artifacts. J. Biol. Chem. 255 (1980) 5931-5942
13. Nielsen-Marsh C.M., Ostrom P.H., Gandhi H., Shapiro B., Cooper A., Hauschka P.V., and Collins M.J. Exceptional preservation of bison bones older than 55 ka as demonstrated by protein and DNA sequences. Geology 20 (2002) 1099-1102
14. Nielsen-Marsh C.M., Richards M.P., Hauschka P.V., Thomas-Oates J.E., Trinkaus E., Pettitt P.B., Karavanic I., Poinar H., and Collins M.J. Osteocalcin protein sequences of Neanderthals and modern primates. Proc. Natl Acad. Sci. USA 102 (2005) 4409-4413
15. Oakenfull E.A., and Clegg J.B. Phylogenetic relationships within the genus Equus and the evolution of the α and θ globin genes. J. Mol. Evol. 47 (1998) 772-778
16. Ostrom P.H., Schall M., Gandhi H., Shen T.-L., Hauschka P.V., Strahler J.R., and Gage D.A. New strategies for characterizing ancient proteins using matrix-assisted laser desorption ionization mass spectrometry. Geochim. Cosmochim. Acta 64 (2000) 1043-1050
17. Paabo S., Poinar H., Serre D., Jaenicke-Despres V., Hebler J., Rohland N., Kuch M., Krause J., Vigilant L., and Hofreiter M. Genetic analysis from ancient DNA. Annu. Rev. Genet. 38 (2004) 645-679
18. Paxinos E.E., James H.F., Olson S.L., Sorenson M.D., Jackson J., and Fleischer R.C. MtDNA from fossils reveals a radiation of Hawaiian geese recently derived from the Canada goose (Branta Canadensis). Proc. Natl. Acad. Sci. USA 99 (2002) 1399-1404
19. Robbins L.L., Muyzer G., and Brew K. Macromolecules from living and fossil biominerals: Implications for the establishment of molecular phylogenies. In: Engel M.H., and Macko S.A. (Eds). Organic Geochemistry: Principles and Applications (1993), Plenum Press, New York 799-816
20. Shimomura H., Kanai Y., and Sanada K. Primary structure of cat osteocalcin. J. Biochem. Tokyo 96 (1984) 405-411
21. Stafford Jr. T.W., Hare P.E., Currie L.A., Jull A.J.T., and Donahue D. Accelerator radiocarbon dating at the molecular level. J. Arch. Sci. 18 (1991) 35-72
22. Wayne R.K., Leonard J.A., and Cooper A. Full of sound and fury: The recent history of ancient DNA. Annu. Rev. Ecolog. Syst. 30 (1999) 457-477
23. Weinstock J., Willerslev E., Sher A., Tong W., Ho S.Y.W., Rubenstein D., Storer J., Burns J., Martin L., Bravi C., Prieto A., Froese D., Scott E., Xulong L., and Cooper A. Evolution, systematics, and phylogeography of Pleistocene horses in the new world: a molecular perspective. PLoS Biol. 3 8 (2005) 0001-0007
24. Willerslev E., and Cooper A. Ancient DNA. Proc. R. Soc. Lond. Ser. B., Biol. Sci. 272 1558 (2005) 3-16
25. Wysocki V.H., Tsaprailis G., Smith L.L., and Breci L.A. Mobile and localized protons: A framework for understanding peptide dissociation. J. Mass Spectrom. 35 (2000) 1399-1406