On 3DD-curves of DNA sequences

Molecular Simulation

Volumn 32, Issue 1, 2006, Pages 29-34

  Zhang, Y ^a,c   Liao, B ^b,c   Ding, K ^c  

^a SHANDONG UNIVERSITY   (China)

^b HUNAN UNIVERSITY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

3DD curve; DNA; Graphical representation; Phylogenetic trees

Indexed keywords

DNA; GRAPH THEORY; TREES (MATHEMATICS);

3DD-CURVE; GRAPHICAL REPRESENTATION; PHYLOGENETIC TREES;

DNA SEQUENCES;

EID: 33645773006     PISSN: 08927022     EISSN: None     Source Type: Journal    
DOI: 10.1080/08927020500517223     Document Type: Article

References (16)

1. M.A. Gates. A simple way to look at DNA. J. Theor. Biol., 119, 319 (1986).
2. A. Nandy. Graphical representation of long DNA sequences. Curr. Sci., 66, 821 (1994).
3. P.M. Leong, S. Morgenthaler. Random walk and gap plots of DNA sequences. Comput. Appl. Biosci., 12, 503 (1995).
4. M. Randić, M. Vračko, N. Lerš, D. Plavšić. Novel 2-D graphical representation of DNA sequences and their numberical characterization. Chem. Phys. Lett., 368, 1 (2003).
5. B. Liao. A 2D graphical representation of DNA sequence. Chem. Phys. Lett., 401, 196 (2005).
6. Y. Wu, A.W. Liew, H. Van, M. Yang. DB-Curve: A novel 2D method of DNA sequence visualization and reprsentation. Chem. Phys. Lett., 367, 170 (2003).
7. M. Randic, M. Vracko, A. Nandy, S.C. Basak. On 3-D graphical representation of DNA primary sequence and their numerical characterization. J. Chem. Inf. Comput. Sci., 40, 1235 (2000).
8. E. Hamori, J. Ruskin. H-curves, a novel method of representation of nucleotides series especially suited for long DNA sequences. J. Biol. Chem.,258. 1318 (1983).
9. C. Yuan, B. Liao, T. Wang. New 3-D graphical representation of DNA sequences and their numerical characterization. Chem. Phys. Lett., 379, 412 (2003).
10. C. Li, J. Wang. On a 3-D representation of DNA primary sequences. Comb. Chem. High Throughput Screen., 7, 23 (2004).
11. M. Randić, M. Vracko, N. Lers, D. Plavšić. Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation. Chem. Phys. Lett., 371, 202 (2003).
12. M. Randić. Condensed representation of DNA primary sequences. J. Chem. Inf. Comput. Sci., 40, 50 (2000).
13. M. Randić, X.F. Quo, S.C. Basak. On the characterization of DNA primary sequence by triplet of nucleic acid bases. J. Chem. Inf. Comput. Sci., 41, 619(2001).
14. B. Liao, Y. Zhang, K. Ding, T. Wang. Analysis of similarity/dissimilarity of DNA sequences based on a condensed curve representation. J. Mol Struct. Theochem., 717, 199 (2005).
15. B. Liao, T. Wang. 3-D graphical representation of DNA sequences and their numerical characterization. J. Mol. Struct. Theochem., 681, 209 (2004).
16. K. Hayasaka, T. Gojobori, S. Horai. Molecular phylogeny and evolution of primate mitochondrial DNA. Mol. Biol. Evol., 5, 626 (1988).