The efficiency of mapping of quantitative trait loci using cofactor analysis in half-sib design

Genetics Selection Evolution

Volumn 38, Issue 2, 2006, Pages 167-182

  Sahana, Goutam ^a   De Koning, Dirk Jan ^b   Guldbrandtsen, Bernt ^a   Sørensen, Peter ^a   Lund, Mogens Sandø ^a  

^a DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Cofactor analysis; False positives; Power; Quantitative trait loci

Indexed keywords

CHROMOSOME; GENETIC VARIATION; HERITABILITY; MAPPING; POPULATION MODELING;

ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; COMPUTER SIMULATION; FAMILY; FEMALE; GENETIC LINKAGE; GENETIC MARKER; GENOTYPE; HUMAN; MALE; MULTIFACTORIAL INHERITANCE; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; STATISTICAL MODEL;

CHROMOSOME MAPPING; COMPUTER SIMULATION; FAMILY; FEMALE; GENETIC MARKERS; GENOTYPE; HUMANS; LINKAGE (GENETICS); MALE; MODELS, GENETIC; MODELS, STATISTICAL; MULTIFACTORIAL INHERITANCE; PHENOTYPE; QUANTITATIVE TRAIT LOCI;

EID: 33645759991     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1051/gse:2005034     Document Type: Article

References (20)

1. Bennewitz J., Reinsch N., Guiard V., Fritz S., Thomsen H., Looft C., Kuhn C., Schwerin M., Weimann C., Erhardt G., Reinhardt F., Reents R., Boichard D., Kalm E., Multiple quantitative trait loci mapping with cofactors and application of alternative variants of the false discovery rate in an enlarged granddaughter design, Genetics 168 (2004) 1019-1027.
2. Churchill G.A., Doerge R.W., Empirical threshold values for quantitative trait mapping, Genetics 138 (1994) 963-971.
3. De Koning D.J., Schulman N.F., Elo K., Moisio S., Kinos R., Vilkki J., Maki-Tanila A., Mapping of multiple quantitative trait loci by simple regression in half-sib designs, J. Anim. Sci. 79 (2001) 616-622.
4. De Koning D.J., Haley C.S., Windsor D., Hocking P.M., Griffin H., Morris A., Vincent J., Burt D.W., Segregation of QTL for production traits in commercial meat-type chickens, Genet. Res. 83 (2004) 211-220.
5. Doerge R.W., Churchill G.A., Permutation tests for multiple loci affecting a quantitative character, Genetics 142 (1996) 285-294.
6. Georges M., Nielsen D., Mackinnon M., Mishra A., Okimoto R., Pasquino A.T., Sargeant L.S., Sorensen A., Steele M.R., Zhao X., Womack J.E., Hoeschele I., Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing, Genetics 139 (1995) 907-920.
7. Haley C.S., Knott S.A., Elsen J.M., Mapping quantitative trait loci in crosses between outbred lines using least squares, Genetics 136 (1994) 1195-1207.
8. Hayes B., Goddard M.E., The distribution of the effects of genes affecting quantitative traits in livestock, Genet. Sel. Evol. 33 (2001) 209-229.
9. Holmberg M., Andersson-Eklund L., Quantitative trait loci affecting health traits in Swedish dairy cattle, J. Dairy Sci. 87 (2004) 2653-2659.
10. Jansen R.C., Interval mapping of multiple quantitative trait loci, Genetics 135 (1993) 205-211.
11. Jansen R.C., Controlling the type I and type II errors in mapping quantitative trait loci, Genetics 138 (1994) 871-881.
12. Jansen R.C., Johnson D.L., van Arendonk J.A.M., A mixture model approach to the mapping of quantitative trait loci in complex populations with an application to multiple cattle families, Genetics 148 (1998) 391-399.
13. Kao C.H., Zeng Z.B., Teasdale R.D., Multiple interval mapping for quantitative trait loci, Genetics 152 (1999) 1203-1216.
14. Lander E.S., Bostein D., Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps, Genetics 121 (1989) 185-199.
15. Piepho H.P., A quick method for computing approximate threshold for quantitative trait loci detection, Genetics 157 (2001) 425-432.
16. Schulman N.F., Viitala S.M., de Koning D.J., Virta J., Maki-Tanila A., Vikki J.H., Quantitative trait loci for health traits in Finnish Ayrshire cattle, J. Dairy Sci. 87 (2004) 443-449.
17. van der Beek S., van Arendonk J.A.M., Groen A.F., Power of two- and three-generation QTL mapping experiments in an outbred population containing full-sib or half-sib families, Theor. Appl. Genet. 91 (1995) 1115-1124.
18. Viitala S.M., Schulman N.F., de Koning D.J., Elo K., Kinos R., Virta A., Quantitative trait loci affecting milk production traits in Finnish Ayrshire cattle, J. Dairy Sci. 86 (2003) 1828-1836.
19. Weller J.I., Quantitative trait loci analysis, CABI Publishing, Wallinhford, Oxon, UK, 2001.
20. Zeng Z.B., Precision mapping of quantitative trait loci, Genetics 136 (1994) 1457-1468.