메뉴 건너뛰기




Volumn 70, Issue 3, 2006, Pages 350-359

A comparison of individual genotyping and pooled DNA analysis for polymorphism validation prior to large-scale genetic studies

Author keywords

Allele frequency; DNA pooling; Ethnic heterogeneity; Preferential amplification; SNP validation

Indexed keywords

DNA;

EID: 33645730154     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/j.1529-8817.2005.00232.x     Document Type: Article
Times cited : (6)

References (25)
  • 1
    • 8844227502 scopus 로고    scopus 로고
    • Population history and natural selection shape patterns of genetic variation in 132 genes
    • Akey, J. M., Eberle, M. A., Rieder, M. J. et al. (2004) Population history and natural selection shape patterns of genetic variation in 132 genes. PLos Biol 2, 1591-1599.
    • (2004) PLos Biol , vol.2 , pp. 1591-1599
    • Akey, J.M.1    Eberle, M.A.2    Rieder, M.J.3
  • 2
    • 0036866635 scopus 로고    scopus 로고
    • Identification of the sources of error in allele frequency estimations from pooled DNA indicates an optimal experimental design
    • Barratt, B. J., Payne, F., Rance, H. E. et al. (2002) Identification of the sources of error in allele frequency estimations from pooled DNA indicates an optimal experimental design. Ann Hum Genet 66, 393-405.
    • (2002) Ann Hum Genet , vol.66 , pp. 393-405
    • Barratt, B.J.1    Payne, F.2    Rance, H.E.3
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J Roy Stat Soc B Met 57, 289-300.
    • (1995) J Roy Stat Soc B Met , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0035895258 scopus 로고    scopus 로고
    • High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Buetow, K. H., Edmonson, M., MacDonald, R. et al. (2001) High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. PNAS USA 98, 581-584.
    • (2001) PNAS USA , vol.98 , pp. 581-584
    • Buetow, K.H.1    Edmonson, M.2    MacDonald, R.3
  • 5
    • 2442474313 scopus 로고    scopus 로고
    • SNP allele frequency estimation in DNA pools and variance components analysis
    • Downes, K., Barratt, B. J., Akan, P. et al. (2004) SNP allele frequency estimation in DNA pools and variance components analysis. BioTech 36, 840-845.
    • (2004) BioTech , vol.36 , pp. 840-845
    • Downes, K.1    Barratt, B.J.2    Akan, P.3
  • 6
    • 13844313862 scopus 로고    scopus 로고
    • Whole-genome patterns of common DNA variation in three human populations
    • Hinds, D. A., Stuve, L. L., Nilsen, G. B. et al. (2005) Whole-genome patterns of common DNA variation in three human populations. Science 307, 1072-1079.
    • (2005) Science , vol.307 , pp. 1072-1079
    • Hinds, D.A.1    Stuve, L.L.2    Nilsen, G.B.3
  • 7
    • 13144306071 scopus 로고    scopus 로고
    • Genome-wide association studies for common diseases and complex traits
    • Hirschhorn, J. N. & Daly, M. J. (2005) Genome-wide association studies for common diseases and complex traits. Nat Rev Genet 6, 95-108.
    • (2005) Nat Rev Genet , vol.6 , pp. 95-108
    • Hirschhorn, J.N.1    Daly, M.J.2
  • 8
    • 17744380449 scopus 로고    scopus 로고
    • Cheap, accurate and rapid allele frequency estimation of single nucleotide polymorphisms by primer extension and DHPLC in DNA pools
    • Hoogendoorn, B., Norton, N., Jirov, G. et al. (2000) Cheap, accurate and rapid allele frequency estimation of single nucleotide polymorphisms by primer extension and DHPLC in DNA pools. Hum Genet 107, 488-493.
    • (2000) Hum Genet , vol.107 , pp. 488-493
    • Hoogendoorn, B.1    Norton, N.2    Jirov, G.3
  • 9
    • 9444295337 scopus 로고    scopus 로고
    • Gene map of the extended human MHC
    • Horton, R., Wilming, L., Rand, V. et al. (2004) Gene map of the extended human MHC. Nat Rev Genet 5, 889-899.
    • (2004) Nat Rev Genet , vol.5 , pp. 889-899
    • Horton, R.1    Wilming, L.2    Rand, V.3
  • 10
    • 0035094764 scopus 로고    scopus 로고
    • Variation is the spice of life
    • Kruglyak, L. & Nickerson, D. A. (2001) Variation is the spice of life. Nat Genet 27, 234-236.
    • (2001) Nat Genet , vol.27 , pp. 234-236
    • Kruglyak, L.1    Nickerson, D.A.2
  • 11
    • 2342615572 scopus 로고    scopus 로고
    • Positional cloning by linkage disequilibrium
    • Maniatis, N., Collins, A., Gibson, J. et al. (2004) Positional cloning by linkage disequilibrium. Am J Hum Genet 74, 846-855.
    • (2004) Am J Hum Genet , vol.74 , pp. 846-855
    • Maniatis, N.1    Collins, A.2    Gibson, J.3
  • 12
    • 0037168559 scopus 로고    scopus 로고
    • High-throughput screening for evidence of association by using mass spectrometry genotyping on DNA pools
    • Mohlke, K. L., Erdos, M. R., Scott, L. J. et al. (2002) High-throughput screening for evidence of association by using mass spectrometry genotyping on DNA pools. PNAS USA 99, 16928-16933.
    • (2002) PNAS USA , vol.99 , pp. 16928-16933
    • Mohlke, K.L.1    Erdos, M.R.2    Scott, L.J.3
  • 13
    • 15544371188 scopus 로고    scopus 로고
    • Streamlined analysis of pooled genotype data in SNP-based association studies
    • Moskvina, V., Norton, N., Williams, N. et al. (2005) Streamlined analysis of pooled genotype data in SNP-based association studies. Genet Epidemiol 28, 273-282.
    • (2005) Genet Epidemiol , vol.28 , pp. 273-282
    • Moskvina, V.1    Norton, N.2    Williams, N.3
  • 14
    • 4444312513 scopus 로고    scopus 로고
    • Large-scale validation of single nucleotide polymorphism in gene regions
    • Nelson, M. R., Marnellos, G., Kammerer, S. et al. (2004) Large-scale validation of single nucleotide polymorphism in gene regions. Genome Res 14, 1664-1668.
    • (2004) Genome Res , vol.14 , pp. 1664-1668
    • Nelson, M.R.1    Marnellos, G.2    Kammerer, S.3
  • 15
    • 0026629701 scopus 로고
    • Strategies for characterizing highly polymorphic markers in human gene mapping
    • Ott, J. (1992) Strategies for characterizing highly polymorphic markers in human gene mapping. Am J Hum Genet 51, 283-290.
    • (1992) Am J Hum Genet , vol.51 , pp. 283-290
    • Ott, J.1
  • 16
    • 33645746136 scopus 로고    scopus 로고
    • Establishment of Taiwan Han Chinese Cell and Gene bank: Comparing SNP profiles in MHC region with Caucasians
    • Pan, W. H., Fann, C. S. J., Wu, J. Y. et al. (2004) Establishment of Taiwan Han Chinese Cell and Gene bank: Comparing SNP profiles in MHC region with Caucasians. Am J Hum Genet, S1149.
    • (2004) Am J Hum Genet
    • Pan, W.H.1    Fann, C.S.J.2    Wu, J.Y.3
  • 17
    • 0036844881 scopus 로고    scopus 로고
    • DNA pooling: A tool for large-scale association studies
    • Sham, P., Bader, J. S., Craig, I. et al. (2002) DNA pooling: A tool for large-scale association studies. Nat Rev Genet 3, 862-871.
    • (2002) Nat Rev Genet , vol.3 , pp. 862-871
    • Sham, P.1    Bader, J.S.2    Craig, I.3
  • 18
    • 0034939842 scopus 로고    scopus 로고
    • Polymorphism identification within 50 equine gene-specific sequence tagged sites
    • Shubitowski, D. M., Venta, P. J., Douglass, C. L. et al. (2001) Polymorphism identification within 50 equine gene-specific sequence tagged sites. Anim Genet 32, 78-88.
    • (2001) Anim Genet , vol.32 , pp. 78-88
    • Shubitowski, D.M.1    Venta, P.J.2    Douglass, C.L.3
  • 19
    • 0037739946 scopus 로고    scopus 로고
    • Simple method to analyze SNP-based association studies using DNA pools
    • Visscher, P. M. & Hellard, S. L. (2003) Simple method to analyze SNP-based association studies using DNA pools. Genet Epidemiol 24, 291-296.
    • (2003) Genet Epidemiol , vol.24 , pp. 291-296
    • Visscher, P.M.1    Hellard, S.L.2
  • 20
    • 0041828234 scopus 로고    scopus 로고
    • An integrated haplotype map of the human major histocompatibility complex
    • Walsh, E. C., Mather, K. A., Schaffner, S. F. et al. (2003) An integrated haplotype map of the human major histocompatibility complex. Am J Hum Genet 73, 580-590.
    • (2003) Am J Hum Genet , vol.73 , pp. 580-590
    • Walsh, E.C.1    Mather, K.A.2    Schaffner, S.F.3
  • 21
    • 13144265739 scopus 로고    scopus 로고
    • Genome-wide association studies: Theoretical and practical concerns
    • Wang, W. Y. S., Barratt, B. J., Clayton, D. G. et al. (2005) Genome-wide association studies: Theoretical and practical concerns. Nat Rev Genet 6, 109-118.
    • (2005) Nat Rev Genet , vol.6 , pp. 109-118
    • Wang, W.Y.S.1    Barratt, B.J.2    Clayton, D.G.3
  • 22
    • 0036301060 scopus 로고    scopus 로고
    • Large-scale determination of SNP allele frequencies in DNA pools using MALDI-TOF mass spectrometry
    • Werner, M., Sych, M., Herbon, N. et al. (2002) Large-scale determination of SNP allele frequencies in DNA pools using MALDI-TOF mass spectrometry. Hum Mutat 20, 57-64.
    • (2002) Hum Mutat , vol.20 , pp. 57-64
    • Werner, M.1    Sych, M.2    Herbon, N.3
  • 23
    • 0034537609 scopus 로고    scopus 로고
    • High-throughput SNP detection by using DNA pooling and denaturing high performance liquid chromatography (DHPLC)
    • Woldford, J. K., Blunt, D., Ballecer, C. et al. (2000) High-throughput SNP detection by using DNA pooling and denaturing high performance liquid chromatography (DHPLC). Hum Genet 107, 483-487.
    • (2000) Hum Genet , vol.107 , pp. 483-487
    • Woldford, J.K.1    Blunt, D.2    Ballecer, C.3
  • 24
    • 13744260170 scopus 로고    scopus 로고
    • New adjustment factors and sample size calculation in a DNA-pooling experiment with preferential amplification
    • Yang, H. C., Pan, C. C., Lu, R. C. Y. et al. (2005 a) New adjustment factors and sample size calculation in a DNA-pooling experiment with preferential amplification. Genetics 169, 399-410.
    • (2005) Genetics , vol.169 , pp. 399-410
    • Yang, H.C.1    Pan, C.C.2    Lu, R.C.Y.3
  • 25
    • 33645744857 scopus 로고    scopus 로고
    • PDA: Pooled DNA analyzer
    • Submitted
    • Yang, H. C., Pan, C. C., Lin, C. Y. et al. (2005 b) PDA: Pooled DNA analyzer. Submitted.
    • (2005)
    • Yang, H.C.1    Pan, C.C.2    Lin, C.Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.