-
1
-
-
0033006010
-
Evolution of antigen binding receptors
-
Litman, G. W.; Anderson, M. K.; Rast, J. P. Evolution of Antigen Binding Receptors. Annu. Rev. Immunol. 1999, 17, 109-147.
-
(1999)
Annu. Rev. Immunol.
, vol.17
, pp. 109-147
-
-
Litman, G.W.1
Anderson, M.K.2
Rast, J.P.3
-
2
-
-
0036218697
-
Producing nature's gene-chips: The generation of peptides for display by MHC class I molecules
-
Shastri, N.; Schwab, S.; Serwold, T. Producing nature's gene-chips: The generation of peptides for display by MHC class I molecules. Annu. Rev. Immunol. 2002, 20, 463-463.
-
(2002)
Annu. Rev. Immunol.
, vol.20
, pp. 463-463
-
-
Shastri, N.1
Schwab, S.2
Serwold, T.3
-
3
-
-
0026078930
-
Structure of the T cell antigen receptor (TCR): Two CD3 epsilon subunits in a functional TCR/CD3 complex
-
de la Hera, A.; Muller, U.; Olsson, C.; Isaaz, S.; Tunnacliffe, A. Structure of the T Cell Antigen Receptor (TCR): Two CD3 Epsilon Subunits in a Functional TCR/CD3 Complex. J. Exp. Med. 1991, 173, 7-17.
-
(1991)
J. Exp. Med.
, vol.173
, pp. 7-17
-
-
De La Hera, A.1
Muller, U.2
Olsson, C.3
Isaaz, S.4
Tunnacliffe, A.5
-
4
-
-
0035664005
-
Evolution of T cell receptor (TCR) alpha beta heterodimer assembly with the CD3 complex
-
Gouaillard, C.; Huchenq-Champagne, A.; Arnaud, J.; Chen, C. L.; Rubin, B. Evolution of T cell Receptor (TCR) Alpha Beta Heterodimer Assembly with the CD3 Complex. Eur. J. Immunol. 2001, 31, 3798-805.
-
(2001)
Eur. J. Immunol.
, vol.31
, pp. 3798-3805
-
-
Gouaillard, C.1
Huchenq-Champagne, A.2
Arnaud, J.3
Chen, C.L.4
Rubin, B.5
-
5
-
-
0029557542
-
Human T-cell receptor variable gene segment families
-
Arden, B.; Clark, S. P.; Kabelitz, D.; Mak, T. W. Human T-cell Receptor Variable Gene Segment Families. Immunogenetics 1995, 42, 455-500.
-
(1995)
Immunogenetics
, vol.42
, pp. 455-500
-
-
Arden, B.1
Clark, S.P.2
Kabelitz, D.3
Mak, T.W.4
-
6
-
-
0034448719
-
Accessibility control of T cell receptor gene rearrangement in developing thymocytes. The TCR alpha/delta locus
-
Krangel, M. S.; McMurry, M. T.; Hernandez-Munain, C.; Zhong, X. P.; Carabana, J. Accessibility Control of T Cell Receptor Gene Rearrangement in Developing Thymocytes. The TCR Alpha/Delta Locus. Immunol. Res. 2000, 22, 127-35.
-
(2000)
Immunol. Res.
, vol.22
, pp. 127-135
-
-
Krangel, M.S.1
McMurry, M.T.2
Hernandez-Munain, C.3
Zhong, X.P.4
Carabana, J.5
-
7
-
-
0043268924
-
Dynamics of cell surface molecules during T cell recognition
-
Davis, M. M.; Krogsgaard, M.; Huppa, J. B.; Sumen, C.; Purbhoo, M. A.; Irvine, D. J.; Wu, L. C.; Ehrlich, L. Dynamics of Cell Surface Molecules During T Cell Recognition. Annu. Rev. Biochem. 2003, 72, 717-742.
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 717-742
-
-
Davis, M.M.1
Krogsgaard, M.2
Huppa, J.B.3
Sumen, C.4
Purbhoo, M.A.5
Irvine, D.J.6
Wu, L.C.7
Ehrlich, L.8
-
8
-
-
0029855347
-
Structure of the complex between human T-cell receptor, viral peptide and HLA-A2
-
Garboczi, D. N.; Ghosh, P.; Utz, U.; Fan, Q. R.; Biddison, W. E.; Wiley, D. C. Structure of the Complex Between Human T-cell Receptor, Viral Peptide and HLA-A2. Nature 1996, 384, 134-41.
-
(1996)
Nature
, vol.384
, pp. 134-141
-
-
Garboczi, D.N.1
Ghosh, P.2
Utz, U.3
Fan, Q.R.4
Biddison, W.E.5
Wiley, D.C.6
-
9
-
-
0029662223
-
An alphabeta T cell receptor structure at 2.5 Å and its orientation in the TCR-MHC complex
-
Garcia, K. C.; Degano, M.; Stanfield, R. L.; Brunmark, A.; Jackson, M. R.; Peterson, P. A.; Teyton, L.; Wilson, I. A. An Alphabeta T Cell Receptor Structure at 2.5 Å and Its Orientation in the TCR-MHC Complex. Science 1996, 274, 209-19.
-
(1996)
Science
, vol.274
, pp. 209-219
-
-
Garcia, K.C.1
Degano, M.2
Stanfield, R.L.3
Brunmark, A.4
Jackson, M.R.5
Peterson, P.A.6
Teyton, L.7
Wilson, I.A.8
-
10
-
-
0023758450
-
Site-directed mutations in the VDJ junctional region of a T cell receptor beta chain cause changes in antigenic peptide recognition
-
Engel, I.; Hedrick, S. M. Site-Directed Mutations in the VDJ Junctional Region of a T Cell Receptor Beta Chain Cause Changes in Antigenic Peptide Recognition. Cell 1988, 54, 473-84.
-
(1988)
Cell
, vol.54
, pp. 473-484
-
-
Engel, I.1
Hedrick, S.M.2
-
11
-
-
0030760565
-
Peptide binding by class I and class II MHC molecules
-
Batalia, M. A.; Collins, E. J. Peptide Binding by Class I and Class II MHC Molecules. Biopolymers 1997, 43, 281-302.
-
(1997)
Biopolymers
, vol.43
, pp. 281-302
-
-
Batalia, M.A.1
Collins, E.J.2
-
12
-
-
18344405559
-
Two human T cell receptors bind in a similar diagonal mode to the HLA-A2/tax peptide complex using different TCR amino acids
-
Ding, Y.-H.; Smith, K. J.; Garboczi, D. N.; Utz, U.; Biddison, W. E.; Wiley, D. C. Two Human T Cell Receptors Bind in a Similar Diagonal Mode to the HLA-A2/Tax Peptide Complex Using Different TCR Amino Acids. Immunity 1998, 8, 403-411.
-
(1998)
Immunity
, vol.8
, pp. 403-411
-
-
Ding, Y.-H.1
Smith, K.J.2
Garboczi, D.N.3
Utz, U.4
Biddison, W.E.5
Wiley, D.C.6
-
13
-
-
0032549142
-
Structural basis of plasticity in T cell receptor recognition of a self-peptide-MHC antigen
-
Garcia, K. C.; Degano, M.; Pease, L. R.; Huang, M.; Peterson, P. A.; Teyton, L.; Wilson, I. A. Structural Basis of Plasticity in T Cell Receptor Recognition of a Self-Peptide-MHC Antigen. Science 1998, 279, 1166-1172.
-
(1998)
Science
, vol.279
, pp. 1166-1172
-
-
Garcia, K.C.1
Degano, M.2
Pease, L.R.3
Huang, M.4
Peterson, P.A.5
Teyton, L.6
Wilson, I.A.7
-
14
-
-
0033165928
-
Four A6-TCR/peptide/HLA-A2 structures that genarate very different T cell signals are nearly identical
-
Ding, Y.-H.; Baker, B. M.; Garboczi, D. N.; Biddison, W. E.; Wiley, D. C. Four A6-TCR/Peptide/HLA-A2 Structures that Genarate Very Different T Cell Signals Are Nearly Identical. Immunity 1999, 11, 45-56.
-
(1999)
Immunity
, vol.11
, pp. 45-56
-
-
Ding, Y.-H.1
Baker, B.M.2
Garboczi, D.N.3
Biddison, W.E.4
Wiley, D.C.5
-
15
-
-
0348047600
-
Evidence that structural rearrangements and/or flexibility during TCR binding can contribute to T cell activation
-
Krogsgaard, M.; Prado, N.; Adams, E. J.; He, X.-I.; Chow, D.-C.; Wilson, D. B.; Garsia, K. C.; Davis, M. M. Evidence that Structural Rearrangements and/or Flexibility during TCR Binding Can Contribute to T Cell Activation. Mol. Cell 2003, 12, 1367-1378.
-
(2003)
Mol. Cell
, vol.12
, pp. 1367-1378
-
-
Krogsgaard, M.1
Prado, N.2
Adams, E.J.3
He, X.-I.4
Chow, D.-C.5
Wilson, D.B.6
Garsia, K.C.7
Davis, M.M.8
-
16
-
-
0038300653
-
A structural basis for immunodominant human T cell receptor recognition
-
Stewart-Jones, G. B. E.; McMichael, A. J.; Bell, J. I.; Stuart, D. I.; Jones, E. Y. A Structural Basis for Immunodominant Human T Cell Receptor Recognition. Nat. Immunol. 2003, 4, 657-663.
-
(2003)
Nat. Immunol.
, vol.4
, pp. 657-663
-
-
Stewart-Jones, G.B.E.1
McMichael, A.J.2
Bell, J.I.3
Stuart, D.I.4
Jones, E.Y.5
-
17
-
-
0037240790
-
A structural basis for the selection of dominant alphabeta T cell receptors in antiviral immunity
-
Kjer-Nielsen, L.; Clements, C. S.; Purcell, A. W.; Brooks, A. G.; Whisstock, J. C.; Burrows, S. R.; McCluskey, J.; Rossjohn, J. A Structural Basis for the Selection of Dominant Alphabeta T Cell Receptors in Antiviral Immunity. Immunity 2003, 18, 53-64.
-
(2003)
Immunity
, vol.18
, pp. 53-64
-
-
Kjer-Nielsen, L.1
Clements, C.S.2
Purcell, A.W.3
Brooks, A.G.4
Whisstock, J.C.5
Burrows, S.R.6
McCluskey, J.7
Rossjohn, J.8
-
18
-
-
2442489882
-
Structures of HLA-A*1101 complexed with immunodominant nonamer and decamer HIV-1 epitopes clearly reveal the presence of a middle, secondary anchor residue
-
Li, L.; Bouvier, M. Structures of HLA-A*1101 Complexed with Immunodominant Nonamer and Decamer HIV-1 Epitopes Clearly Reveal the Presence of a Middle, Secondary Anchor Residue. J. Immunol. 2004, 172, 6175-6184.
-
(2004)
J. Immunol.
, vol.172
, pp. 6175-6184
-
-
Li, L.1
Bouvier, M.2
-
19
-
-
0033301301
-
Emerging principles for T cell receptor recognition of antigen in cellular immunity
-
Garcia, K. C.; Degano, M.; Speir, J. A.; Wilson, I. A. Emerging Principles for T Cell Receptor Recognition of Antigen in Cellular Immunity. Rev. Immunogen. 1999, 1, 75-90.
-
(1999)
Rev. Immunogen.
, vol.1
, pp. 75-90
-
-
Garcia, K.C.1
Degano, M.2
Speir, J.A.3
Wilson, I.A.4
-
20
-
-
0033696977
-
Enhanced antigen-specific antitumor immunity with altered peptide ligands that stabilize the MHC-peptide-TCR complex
-
Slansky, J. E.; Rattis, F. M.; Boyd, L. F.; Fahmy, T.; Jaffee, E. M.; Schneck, J. P.; Margulies, D. H.; Pardoll, D. M. Enhanced Antigen-Specific Antitumor Immunity with Altered Peptide Ligands that Stabilize the MHC-Peptide-TCR Complex. Immunity 2000, 13, 529-538.
-
(2000)
Immunity
, vol.13
, pp. 529-538
-
-
Slansky, J.E.1
Rattis, F.M.2
Boyd, L.F.3
Fahmy, T.4
Jaffee, E.M.5
Schneck, J.P.6
Margulies, D.H.7
Pardoll, D.M.8
-
21
-
-
0035903287
-
Structural features of peptide analogues of human histocompatibility leukocyte antigen class I epitopes that are more potent and immunogenic than wild-type peptide
-
Tangri, S.; Ishioka, G. Y.; Huang, X.; Sidney, J.; Southwood, S.; Fikes, J.; Sette, A. Structural Features of Peptide Analogues of Human Histocompatibility Leukocyte Antigen Class I Epitopes that Are More Potent and Immunogenic than Wild-Type Peptide. J. Exp. Med. 2001, 194, 833-846.
-
(2001)
J. Exp. Med.
, vol.194
, pp. 833-846
-
-
Tangri, S.1
Ishioka, G.Y.2
Huang, X.3
Sidney, J.4
Southwood, S.5
Fikes, J.6
Sette, A.7
-
22
-
-
0031229803
-
Chimeric peptides: A new approach to enhancing the immunogenicity of peptides with Low MHC class I affinity: Application in antiviral vaccination
-
Tourdot, S.; Oukka, M.; Manuguerra, J. C.; Magafa, V.; Vergnon, I.; Riche, N.; Bruley-Rosset, M.; Cordopatis, P.; Kosmatopoulos, K. Chimeric Peptides: A New Approach to Enhancing the Immunogenicity of Peptides with Low MHC Class I Affinity: Application in Antiviral Vaccination. J. Immunol. 1997, 159, 2391-2398.
-
(1997)
J. Immunol.
, vol.159
, pp. 2391-2398
-
-
Tourdot, S.1
Oukka, M.2
Manuguerra, J.C.3
Magafa, V.4
Vergnon, I.5
Riche, N.6
Bruley-Rosset, M.7
Cordopatis, P.8
Kosmatopoulos, K.9
-
23
-
-
1642407844
-
Identifying human MHC supertypes using bioinformatic methods
-
Doytchinova, I. A.; Guan, P.; Flower, D. R. Identifying Human MHC Supertypes Using Bioinformatic Methods. J. Immunol. 2004, 172, 4314-4323.
-
(2004)
J. Immunol.
, vol.172
, pp. 4314-4323
-
-
Doytchinova, I.A.1
Guan, P.2
Flower, D.R.3
-
24
-
-
0027944195
-
Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
-
Klebe, G.; Abraham, U.; Mietzner, T. Molecular Similarity Indices in a Comparative Analysis (CoMSIA) of Drug Molecules To Correlate and Predict Their Biological Activity. J. Med. Chem. 1994, 37, 4130-4146.
-
(1994)
J. Med. Chem.
, vol.37
, pp. 4130-4146
-
-
Klebe, G.1
Abraham, U.2
Mietzner, T.3
-
25
-
-
0000117331
-
Method for analyzing chemical data in terms of similarity and analogy
-
Kowalski, B. R., Ed.; ACS Symposium Series; American Chemical Society: Washington, DC
-
Wold, S.; Sjöström, M. Method for Analyzing Chemical Data in Terms of Similarity and Analogy. In Chemometrics: Theory and Application; Kowalski, B. R., Ed.; ACS Symposium Series; American Chemical Society: Washington, DC, 1977; Vol. 52, pp 243-282.
-
(1977)
Chemometrics: Theory and Application
, vol.52
, pp. 243-282
-
-
Wold, S.1
Sjöström, M.2
-
26
-
-
28544438391
-
AntiJen: A quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data
-
Toseland, C. P.; Taylor, D. J.; McSparron, H.; Hemsley, S. L.; Blythe, M. J.; Paine, K.; Doytchinova, I. A.; Guan, P.; Hattotuwagama, C. K.; Flower, D. R. AntiJen: A Quantitative Immunology Database Integrating Functional, Thermodynamic, Kinetic, Biophysical, and Cellular Data. Immunome Res. 2005, 1, 4. http://www.immunome-research.com/content/1/1/4.
-
(2005)
Immunome Res.
, vol.1
, pp. 4
-
-
Toseland, C.P.1
Taylor, D.J.2
McSparron, H.3
Hemsley, S.L.4
Blythe, M.J.5
Paine, K.6
Doytchinova, I.A.7
Guan, P.8
Hattotuwagama, C.K.9
Flower, D.R.10
-
27
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
Rammensee, H.; Bachmann, J.; Emmerich, N. P.; Bachor, O. A.; Stevanovic, S. SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 1999, 50, 213-219.
-
(1999)
Immunogenetics
, vol.50
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
28
-
-
0004040193
-
-
(last update June 8) of the Los Alamos National Laboratory
-
HIV Molecular Immunology Database (last update June 8, 2005) of the Los Alamos National Laboratory (www.hiv.lan1.gov).
-
(2005)
HIV Molecular Immunology Database
-
-
-
29
-
-
33645472169
-
EpiJen: A server for multistep T cell epitope prediction
-
in press
-
Doytchinova, I. A.; Guan, P.; Flower, D. R. EpiJen: A Server for Multistep T Cell Epitope Prediction. BMC Bioinf. 2006, 7, in press.
-
(2006)
BMC Bioinf.
, vol.7
-
-
Doytchinova, I.A.1
Guan, P.2
Flower, D.R.3
-
30
-
-
0036589852
-
Additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A*0201
-
Doytchinova, I. A.; Blythe, M. J.; Flower, D. R. Additive Method for the Prediction of Protein-Peptide Binding Affinity. Application to the MHC Class I Molecule HLA-A*0201. J. Proteome Res. 2002, 1, 263-272.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 263-272
-
-
Doytchinova, I.A.1
Blythe, M.J.2
Flower, D.R.3
-
31
-
-
33645699663
-
-
Tripos Inc.: 1699 Hanley Rd., St. Louis, MO 63144
-
SFBFL 6.9; Tripos Inc.: 1699 Hanley Rd., St. Louis, MO 63144.
-
SFBFL 6.9
-
-
-
32
-
-
33846446220
-
Restart procedures for the conjugate gradient method
-
Powell, M. J. D. Restart Procedures for the Conjugate Gradient Method. Math. Prog. 1977, 12, 241-254.
-
(1977)
Math. Prog.
, vol.12
, pp. 241-254
-
-
Powell, M.J.D.1
-
33
-
-
0842341771
-
AMI: A new general purpose quantum mechanical molecular model
-
Dewar, M. J. S.; Zoebisch, E. G.; Healy, E. F.; Stewart, J. J. P. AMI: A New General Purpose Quantum Mechanical Molecular Model. J. Am. Chem. Soc. 1985, 107, 3902-3909.
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 3902-3909
-
-
Dewar, M.J.S.1
Zoebisch, E.G.2
Healy, E.F.3
Stewart, J.J.P.4
-
35
-
-
0037447919
-
A comparative molecular similarity indices (CoMSIA) study of peptide binding to the HLA-A3 superfamily
-
Guan, P.; Doytchinova, I. A.; Flower, D. R. A Comparative Molecular Similarity Indices (CoMSIA) Study of Peptide Binding to the HLA-A3 Superfamily. Bioorg. Med. Chem. 2003, 11, 2307-2311.
-
(2003)
Bioorg. Med. Chem.
, vol.11
, pp. 2307-2311
-
-
Guan, P.1
Doytchinova, I.A.2
Flower, D.R.3
-
36
-
-
20944450033
-
Structural and kinetic basis for heightened immunogenicity of T cell vaccines
-
Chen, J.-L.; Stewart-Jones, G.; Bossi, G.; Lissin, N. M.; Wooldridge, L.; Choi, E. M. L.; Held, G.; Dunbar, P. R.; Esnouf, R. M.; Sami, M.; Boulter, J. M.; Rizkallah, P.; Renner, C.; Sewell, A.; van der Merwe, P. A.; Jakobsen, B. K.; Griffiths, G.; Jones, E. Y.; Cerundolo, V. Structural and Kinetic Basis for Heightened Immunogenicity of T Cell Vaccines. J. Exp. Med. 2005, 201, 1243-1255.
-
(2005)
J. Exp. Med.
, vol.201
, pp. 1243-1255
-
-
Chen, J.-L.1
Stewart-Jones, G.2
Bossi, G.3
Lissin, N.M.4
Wooldridge, L.5
Choi, E.M.L.6
Held, G.7
Dunbar, P.R.8
Esnouf, R.M.9
Sami, M.10
Boulter, J.M.11
Rizkallah, P.12
Renner, C.13
Sewell, A.14
Van Der Merwe, P.A.15
Jakobsen, B.K.16
Griffiths, G.17
Jones, E.Y.18
Cerundolo, V.19
-
37
-
-
0037810680
-
The problem of plain vanilla peptides
-
Davis, M. M. The Problem of Plain Vanilla Peptides. Nat. Immunol. 2003, 4, 649-650.
-
(2003)
Nat. Immunol.
, vol.4
, pp. 649-650
-
-
Davis, M.M.1
-
38
-
-
0035950043
-
Towards the quantitative prediction of T-cell epitopes: CoMFA and CoMSIA studies of peptides with affinity to class I MHC molecule HLA-A*0201
-
Doytchinova, I.; Flower, D. R. Towards the Quantitative Prediction of T-cell Epitopes: CoMFA and CoMSIA Studies of Peptides with Affinity to Class I MHC Molecule HLA-A*0201. J. Med. Chem. 2001, 44, 3572-3581.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 3572-3581
-
-
Doytchinova, I.1
Flower, D.R.2
-
39
-
-
0037102953
-
Physicochemical explanation of peptide binding to HLA-A*0201 major histocompatibility complex: A three-dimensional quantitative structure-activity relationship study
-
Doytchinova I. A.; Flower, D. R. Physicochemical Explanation of Peptide Binding to HLA-A*0201 Major Histocompatibility Complex: A Three-Dimensional Quantitative Structure-Activity Relationship Study. Proteins: Struct., Fund., Genet. 2002, 48, 505-518.
-
(2002)
Proteins: Struct., Fund., Genet.
, vol.48
, pp. 505-518
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
40
-
-
0036706875
-
A comparative molecular similarity index analysis (CoMSIA) study identifies an HLA-A2 binding supermotif
-
Doytchinova I. A.; Flower, D. R. A Comparative Molecular Similarity Index Analysis (CoMSIA) Study Identifies an HLA-A2 Binding Supermotif. J. Comput.-Aided Mol. Des. 2002, 16, 535-544.
-
(2002)
J. Comput.-Aided Mol. Des.
, vol.16
, pp. 535-544
-
-
Doytchinova, I.A.1
Flower, D.R.2
|