Microsatellite markers revealed the genetic diversity of an old Japanese rice landrace 'Echizen'

Genetic Resources and Crop Evolution

Volumn 53, Issue 3, 2006, Pages 499-506

  Kobayashi, Asako ^a   Ebana, Kaworu ^b   Fukuoka, Shuichi ^b   Nagamine, Tsukasa ^b  

^a Fukui Agricultural Experiment Station   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Diversity; Landrace; Microsatellite marker; Oryza sativa; Rice

Indexed keywords

GENETIC VARIATION;

ORYZA SATIVA; ORYZA SATIVA (JAPONICA CULTIVAR-GROUP);

EID: 33645536533     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-004-2029-z     Document Type: Article

References (18)

1. H. Akagi Y. Yokozeki A. Inagaki T. Fujimura 1997 Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related varieties with these microsatellite loci Theor. Appl. Genet. 94 61 67
2. B. Charlesworth P. Sniegowski W. Stephean 1994 Evolutionary dynamics of repetitive DNA in eukaryote Science 371 215 220
3. L.R. Dice 1945 Measures of the amount of ecologic association between species Ecology 26 297 302
4. O.H. Frankel M.E. Soule 1981 Conservation and Evolution Cambridge Univ. Press New York
5. O.H. Frankel A.H.D. Brown J.J. Burdon 1995 The Conservation of Biodiversity Cambridge Univ. Press New York
6. Fukuoka S., Suu T.D., Thrinh L.N., Nagamine T. and Okuno K. 2000. Spatial and temporal aspects of genetic variation in landraces of aromatic rice populations in the Red River Delta Vietnam revealed by RAPD markers. In: Oono K., Voughn D., Tomooka N., Kaga A. and Miyazaki S. (eds.), In situ Conservation Research. Abstracts of the 7th Ministry of Agriculture, Forestry and Fisheries, Japan, International Workshop on Genetic Resources, Research Council Secretariat of MAFF and National Institute of Agrobiological Resources, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan, October 13-15, 1999, pp. 187-202
7. J.C. Glaszmann 1987 Isozyme and classification of Asian rice varieties Theor. Appl. Genet. 74 21 30
8. J.R. Harlan 1975 Our vanishing genetic resources Science 188 618 621
9. S. Kurokawa H. Shibaike H. Akiyama O. Watanabe Y. Yoshimura T. Onoue 2001 The distribution of China jute (Abutilon theophrasti) studied by DNA analysis of pressed leaf specimens (in Japanese) J. Weed Sci. Technol. 46 Suppl 162 163
10. T. Matsuo 1952 Genecological studies on the cultivated rice. (in Japanese with English summary) Bull. Natl. Inst. Agri. Sci. Ser. D 3 1 11
11. S.R. [tmp] McCouch S.D. Tanksley 1991 Development and use of restriction fragment length polymorphism in rice breeding and genetics G.S. Khush G.N. Toenniessen Rice Biotechnology CAB International Wallingford 109 133
12. M.G. Murray W.F. Thompson 1980 Rapid isolation of high molecular weight plant DNA Nucl. Acid Res. 8 4321 4325
13. M. Nakaghara 1978 The differentiation, classification and center of genetic diversity of cultivated rice (Oryza sativa L.) by isozyme analysis Trop. Agric. Res. 11 77 82
14. H.I. Oka 1988 Origin of Cultivated Rice Japan Scientific Societies Press, Elsevier Tokyo
15. W. Powell C.G. Machray J. Provan 1996 Polymorphism revealed by simple sequence repeats Trends Plant Sci. 1 215 222
16. J.B. Ristaino C.T. Groves G. Parra 2001 PCR amplification of the Irish potato famine pathogen from historic specimens Nature 411 695 696
17. S. Tenmykh W. Park N. Ayres S. Cattinhour N. Hauch L. Lipovich Y. Cho T. Ishii S. [tmp] McCouch 2000 Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.) Theor. Appl. Genet. 100 697 712
18. G.P. Yang M.A. Saghai Maroof C.G. Xu Q. Zhang R.M. Biyashev 1994 Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice Mol. Gen. Genet. 245 187 194