메뉴 건너뛰기




Volumn 239, Issue 4, 2006, Pages 445-449

A theoretical analysis of codon adaptation index of the Boophilus microplus bm86 gene directed to the optimization of a DNA vaccine

Author keywords

Boophilus microplus; Bovine; Codon adaptation index; DNA vaccination

Indexed keywords

DNA VACCINE;

EID: 33645415470     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2005.08.009     Document Type: Article
Times cited : (11)

References (19)
  • 1
    • 0242569080 scopus 로고    scopus 로고
    • Codon usage database www.kazusa.or.jp/codon. Last assessing on February 19 of 2004.
    • Codon Usage Database
  • 4
    • 0029550813 scopus 로고
    • Protective efficacy of intramuscular immunization with naked DNA
    • J.J. Donnelly, J.B. Ulmer, and M.A. Liu Protective efficacy of intramuscular immunization with naked DNA Ann. NY Acad. Sci. 772 1995 40 46
    • (1995) Ann. NY Acad. Sci. , vol.772 , pp. 40-46
    • Donnelly, J.J.1    Ulmer, J.B.2    Liu, M.A.3
  • 5
    • 0033551151 scopus 로고    scopus 로고
    • Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
    • L. Duret, and D. Mouchiroud Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis Proc. Natl. Acad. Sci. USA 96 8 1999 4482 4487
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , Issue.8 , pp. 4482-4487
    • Duret, L.1    Mouchiroud, D.2
  • 6
    • 0034046182 scopus 로고    scopus 로고
    • DNA vaccines: Immunology, application, and optimization
    • S. Gurunathan, D.M. Klinman, and R.A. Seder DNA vaccines: immunology, application, and optimization Annu. Rev. Immunol. 18 2000 927 974
    • (2000) Annu. Rev. Immunol. , vol.18 , pp. 927-974
    • Gurunathan, S.1    Klinman, D.M.2    Seder, R.A.3
  • 7
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • T. Ikemura Codon usage and tRNA content in unicellular and multicellular organisms Mol. Biol. Evol. 2 1 1985 13 34
    • (1985) Mol. Biol. Evol. , vol.2 , Issue.1 , pp. 13-34
    • Ikemura, T.1
  • 8
    • 0035220937 scopus 로고    scopus 로고
    • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    • R.D. Knight, S.J. Freeland, and L.F. Landweber A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes Genome Biol. 2 4 2001 research0010.0011- 0010.0013
    • (2001) Genome Biol. , vol.2 , Issue.4
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 9
    • 0035852322 scopus 로고    scopus 로고
    • Polynucleotide viral vaccines: Codon optimisation and ubiquitin conjugation enhances prophylactic and therapeutic efficacy
    • W.J. Liu, K.N. Zhao, F.G. Gao, G.R. Leggatt, G.J. Fernando, and I.H. Frazer Polynucleotide viral vaccines: codon optimisation and ubiquitin conjugation enhances prophylactic and therapeutic efficacy Vaccine 20 5-6 2001 862 869
    • (2001) Vaccine , vol.20 , Issue.5-6 , pp. 862-869
    • Liu, W.J.1    Zhao, K.N.2    Gao, F.G.3    Leggatt, G.R.4    Fernando, G.J.5    Frazer, I.H.6
  • 10
    • 0033516966 scopus 로고    scopus 로고
    • Codon optimization effect on translational efficiency of DNA vaccine in mammalian cells: Analysis of plasmid DNA encoding a CTL epitope derived from microorganisms
    • T. Nagata, M. Uchijima, A. Yoshida, M. Kawashima, and Y. Koide Codon optimization effect on translational efficiency of DNA vaccine in mammalian cells: analysis of plasmid DNA encoding a CTL epitope derived from microorganisms Biochem. Biophys. Res. Commun. 261 2 1999 445 451
    • (1999) Biochem. Biophys. Res. Commun. , vol.261 , Issue.2 , pp. 445-451
    • Nagata, T.1    Uchijima, M.2    Yoshida, A.3    Kawashima, M.4    Koide, Y.5
  • 11
    • 0035190397 scopus 로고    scopus 로고
    • Codon optimization of gene fragments encoding Plasmodium falciparum merzoite proteins enhances DNA vaccine protein expression and immunogenicity in mice
    • D.L. Narum, S. Kumar, W.O. Rogers, S.R. Fuhrmann, H. Liang, M. Oakley, A. Taye, B.K. Sim, and S.L. Hoffman Codon optimization of gene fragments encoding Plasmodium falciparum merzoite proteins enhances DNA vaccine protein expression and immunogenicity in mice Infect. Immun. 69 12 2001 7250 7253
    • (2001) Infect. Immun. , vol.69 , Issue.12 , pp. 7250-7253
    • Narum, D.L.1    Kumar, S.2    Rogers, W.O.3    Fuhrmann, S.R.4    Liang, H.5    Oakley, M.6    Taye, A.7    Sim, B.K.8    Hoffman, S.L.9
  • 14
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • P.M. Sharp, and W.H. Li The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications Nucleic Acid Res. 15 3 1987 1281 1295
    • (1987) Nucleic Acid Res. , vol.15 , Issue.3 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 15
    • 0023762645 scopus 로고
    • Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; A review of the considerable within-species diversity
    • P.M. Sharp, E. Cowe, D.G. Higgins, D.C. Shields, K.H. Wolfe, and F. Wright Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity Nucleic Acids Res. 16 17 1988 8207 8211
    • (1988) Nucleic Acids Res. , vol.16 , Issue.17 , pp. 8207-8211
    • Sharp, P.M.1    Cowe, E.2    Higgins, D.G.3    Shields, D.C.4    Wolfe, K.H.5    Wright, F.6
  • 17
    • 0029908504 scopus 로고    scopus 로고
    • Protein secondary structural types are differentially coded on messenger RNA
    • T.A. Thanaraj, and P. Argos Protein secondary structural types are differentially coded on messenger RNA Protein Sci. 5 10 1996 1973 1983
    • (1996) Protein Sci. , vol.5 , Issue.10 , pp. 1973-1983
    • Thanaraj, T.A.1    Argos, P.2
  • 18
    • 0032533471 scopus 로고    scopus 로고
    • Optimization of codon usage of plasmid DNA vaccine is required for the effective MHC class I-restricted T cell responses against an intracellular bacterium
    • M. Uchijima, A. Yoshida, T. Nagata, and Y. Koide Optimization of codon usage of plasmid DNA vaccine is required for the effective MHC class I-restricted T cell responses against an intracellular bacterium J. Immunol. 161 10 1998 5594 5599
    • (1998) J. Immunol. , vol.161 , Issue.10 , pp. 5594-5599
    • Uchijima, M.1    Yoshida, A.2    Nagata, T.3    Koide, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.