-
1
-
-
0037686112
-
The topology of the regulatory interactions predicts the expression pattern of the Drosophila segment polarity genes
-
Albert R, Othmer HG. The topology of the regulatory interactions predicts the expression pattern of the Drosophila segment polarity genes. J Theor Biol 2003; 223(1): 1-18
-
(2003)
J Theor Biol
, vol.223
, Issue.1
, pp. 1-18
-
-
Albert, R.1
Othmer, H.G.2
-
2
-
-
0003880161
-
-
Garland Publishing, NY
-
Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P. Molecular biology of the cell, 4th edn. Garland Publishing, NY, 2002
-
(2002)
Molecular Biology of the Cell, 4th Edn.
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
3
-
-
0017745278
-
A global stability criterion for simple control loops
-
Allwright DJ. A global stability criterion for simple control loops. J Math Biol 1997; 4: 363-373
-
(1997)
J Math Biol
, vol.4
, pp. 363-373
-
-
Allwright, D.J.1
-
5
-
-
9644284380
-
Inference of signaling and gene regulatory networks by steady-state perturbation experiments: Structure and accuracy
-
Andrec M, Kholodenko BN, Levy RM, Sontag E. Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy. J Theor Biol 2005; 232: 427-441
-
(2005)
J Theor Biol
, vol.232
, pp. 427-441
-
-
Andrec, M.1
Kholodenko, B.N.2
Levy, R.M.3
Sontag, E.4
-
6
-
-
1042288931
-
A small-gain theorem for almost global convergence of monotone systems
-
Angeli D, De Leenheer P, Sontag ED. A small-gain theorem for almost global convergence of monotone systems. Syst Control Lett 2004; 51: 185-202
-
(2004)
Syst Control Lett
, vol.51
, pp. 185-202
-
-
Angeli, D.1
De Leenheer, P.2
Sontag, E.D.3
-
7
-
-
14344249319
-
Remaks on monotonicity and convergence in chemical reaction networks
-
Paradise Island, Bahamas. December, IEEE Publications
-
Angeli D, De Leenheer P, Sontag ED. Remaks on monotonicity and convergence in chemical reaction networks. In: Proceedings of the IEEE conference on decision and control, Paradise Island, Bahamas. December, 2004, IEEE Publications, pp 243-248
-
(2004)
Proceedings of the IEEE Conference on Decision and Control
, pp. 243-248
-
-
Angeli, D.1
De Leenheer, P.2
Sontag, E.D.3
-
8
-
-
1242274449
-
Detection of multi-stability, bifurcations, and hysteresis in a large class of biological positive-feedback systems
-
Angeli D, Ferrell Jr JE, Sontag ED. Detection of multi-stability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. Proc Natl Acad Sci USA 2004; 101: 1822-1827
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1822-1827
-
-
Angeli, D.1
Ferrell Jr., J.E.2
Sontag, E.D.3
-
9
-
-
14344254778
-
An analysis of a circadian model using the small-gain approach to monotone systems
-
Paradise Island, Bahamas. December, IEEE Publications
-
Angeli D, Sontag ED. An analysis of a circadian model using the small-gain approach to monotone systems. In: Proceedings of the IEEE conference on decision and control, Paradise Island, Bahamas. December, 2004, IEEE Publications, pp 575-578
-
(2004)
Proceedings of the IEEE Conference on Decision and Control
, pp. 575-578
-
-
Angeli, D.1
Sontag, E.D.2
-
10
-
-
4444294821
-
Interconnections of monotone systems with steady-state characteristics
-
de Queiroz M, Malisoff M, Wolenski P (eds). Springer-Verlag, Heidelberg
-
Angeli D, Sontag ED. Interconnections of monotone systems with steady-state characteristics. In: de Queiroz M, Malisoff M, Wolenski P (eds) Optimal control, stabilization, and nonsmooth analysis. Springer-Verlag, Heidelberg, 2004, pp 135-154
-
(2004)
Optimal Control, Stabilization, and Nonsmooth Analysis
, pp. 135-154
-
-
Angeli, D.1
Sontag, E.D.2
-
11
-
-
1042288931
-
Multistability in monotone I/O systems
-
Angeli D, Sontag ED. Multistability in monotone I/O systems. Syst Control Lett 2004; 51: 185-202
-
(2004)
Syst Control Lett
, vol.51
, pp. 185-202
-
-
Angeli, D.1
Sontag, E.D.2
-
14
-
-
0242515913
-
The JNK cascade as a biochemical switch in mammalian cells: Ultrasensitive and all-or-none responses
-
Bagowski CP, Besser J, Frey CR, Ferrell Jr JE. The JNK cascade as a biochemical switch in mammalian cells: ultrasensitive and all-or-none responses. Curr Biol 2003; 13: 315-320
-
(2003)
Curr Biol
, vol.13
, pp. 315-320
-
-
Bagowski, C.P.1
Besser, J.2
Frey, C.R.3
Ferrell Jr., J.E.4
-
15
-
-
0000130214
-
Motile behavior of bacteria
-
January
-
Berg HC. Motile behavior of bacteria. Physics Today. Available at: http://www.aip.org/pt/jan00/berg.htm, January, 2000
-
(2000)
Physics Today
-
-
Berg, H.C.1
-
16
-
-
0017833657
-
A model for the statistical fluctuations of protein numbers in a microbial population
-
Berg OG. A model for the statistical fluctuations of protein numbers in a microbial population. J Theor Biol 1978; 71: 587-603
-
(1978)
J Theor Biol
, vol.71
, pp. 587-603
-
-
Berg, O.G.1
-
18
-
-
0037047611
-
MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network
-
Bhalla US, Ram PT, Iyengar R. MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network. Science 2002; 297: 1018-1023
-
(2002)
Science
, vol.297
, pp. 1018-1023
-
-
Bhalla, U.S.1
Ram, P.T.2
Iyengar, R.3
-
19
-
-
85180901314
-
-
Available at: http://www.cellsignal.com
-
-
-
-
20
-
-
18844380444
-
Robustness and fragility of Boolean models for genetic regulatory networks
-
Chaves M, Albert R, Sontag ED. Robustness and fragility of Boolean models for genetic regulatory networks. J Theor Biol 2005; 235: 431-449
-
(2005)
J Theor Biol
, vol.235
, pp. 431-449
-
-
Chaves, M.1
Albert, R.2
Sontag, E.D.3
-
21
-
-
6344223567
-
Optimal length and signal amplification in weakly activated signal transduction cascades
-
Chaves M, Dinerstein RJ, Sontag ED. Optimal length and signal amplification in weakly activated signal transduction cascades. J Phys Chem 2004; 108: 15311-15320
-
(2004)
J Phys Chem
, vol.108
, pp. 15311-15320
-
-
Chaves, M.1
Dinerstein, R.J.2
Sontag, E.D.3
-
22
-
-
18144416056
-
State-estimators for chemical reaction networks of Feinberg-Horn-Jackson zero deficiency type
-
Chaves M, Sontag ED. State-estimators for chemical reaction networks of Feinberg-Horn-Jackson zero deficiency type. Eur J Control 2002; 8: 343-359
-
(2002)
Eur J Control
, vol.8
, pp. 343-359
-
-
Chaves, M.1
Sontag, E.D.2
-
23
-
-
79960703324
-
Computation of amplification for systems arising from cellular signaling pathways
-
Prague. July. See also: arxiv.org q-bio.QM/0408012 Aug 2004
-
Chaves M, Sontag ED. Computation of amplification for systems arising from cellular signaling pathways. In: Proceedings of the 16th IFAC World congress, Prague. July, 2005. See also: arxiv.org q-bio.QM/0408012 Aug 2004
-
(2005)
Proceedings of the 16th IFAC World Congress
-
-
Chaves, M.1
Sontag, E.D.2
-
24
-
-
14344264702
-
Gains and optimal design in signaling pathways
-
Paradise Island, Bahamas. December, IEEE Publications
-
Chaves M, Sontag ED, Dinerstein RJ. Gains and optimal design in signaling pathways. In: Proceedings of the IEEE conference on decision and control, Paradise Island, Bahamas. December, 2004, IEEE Publications, pp 596-601
-
(2004)
Proceedings of the IEEE Conference on Decision and Control
, pp. 596-601
-
-
Chaves, M.1
Sontag, E.D.2
Dinerstein, R.J.3
-
25
-
-
1542358791
-
Steady-states of receptor-ligand dynamics: A theoretical framework
-
Chaves M, Sontag ED, Dinerstein RJ, Steady-states of receptor-ligand dynamics: a theoretical framework. J Theor Biol 2004; 227: 413-428
-
(2004)
J Theor Biol
, vol.227
, pp. 413-428
-
-
Chaves, M.1
Sontag, E.D.2
Dinerstein, R.J.3
-
26
-
-
0036306859
-
Positive and negative feedback: Striking a balance between necessary antagonists
-
Cinquin O, Demongeot J. Positive and negative feedback: striking a balance between necessary antagonists. J Theor Biol 2002; 216: 229-241
-
(2002)
J Theor Biol
, vol.216
, pp. 229-241
-
-
Cinquin, O.1
Demongeot, J.2
-
27
-
-
21944436489
-
Some remarks on a boundedness assumption for monotone dynamical systems
-
Dancer EN. Some remarks on a boundedness assumption for monotone dynamical systems. Proc AMS 1998; 126: 801-807
-
(1998)
Proc AMS
, vol.126
, pp. 801-807
-
-
Dancer, E.N.1
-
29
-
-
0036500609
-
A genomic regulatory network for development
-
Davidson EH et al. A genomic regulatory network for development. Science 2002; 295; 1669-1678
-
(2002)
Science
, vol.295
, pp. 1669-1678
-
-
Davidson, E.H.1
-
31
-
-
85180885195
-
A tutorial on monotone systems - With an application to chemical reaction networks
-
CD-ROM, WP9.1, Katholieke Universiteit Leuven
-
De Leenheer P, Angeli D, Sontag ED. A tutorial on monotone systems - with an application to chemical reaction networks. In: Proceedings of the 16th international symposium on mathematical theory of networks and systems (MTNS 2004), CD-ROM, WP9.1, Katholieke Universiteit Leuven
-
Proceedings of the 16th International Symposium on Mathematical Theory of Networks and Systems (MTNS 2004)
-
-
De Leenheer, P.1
Angeli, D.2
Sontag, E.D.3
-
33
-
-
0021803798
-
Kinetics and concentration dependence of reversible cAMP-induced modification of the surface cAMP receptor in dictyostelium
-
Devreotes P, Sherring J. Kinetics and concentration dependence of reversible cAMP-induced modification of the surface cAMP receptor in Dictyostelium. J Biol Chem 1985; 260: 6378-6384
-
(1985)
J Biol Chem
, vol.260
, pp. 6378-6384
-
-
Devreotes, P.1
Sherring, J.2
-
35
-
-
33645940926
-
Non-monotone systems decomposable into monotone systems with negative feedback
-
to appear. (doi:10.1016/j.jde.2005.05.007)
-
Enciso GA, Smith HL, Sontag ED. Non-monotone systems decomposable into monotone systems with negative feedback. J. Differential Equations, to appear. (doi:10.1016/j.jde.2005.05.007)
-
J. Differential Equations
-
-
Enciso, G.A.1
Smith, H.L.2
Sontag, E.D.3
-
36
-
-
33644537705
-
Global attractivity, I/O monotone small-gain theorems, and biological delay systems
-
Enciso GA, Sontag ED. Global attractivity, I/O monotone small-gain theorems, and biological delay systems. Discrete Continuous Dynam Syst, 2006; 14: 549-578
-
(2006)
Discrete Continuous Dynam Syst
, vol.14
, pp. 549-578
-
-
Enciso, G.A.1
Sontag, E.D.2
-
37
-
-
10444225481
-
Monotone systems under positive feedback: Multistability and a reduction theorem
-
Enciso GA, Sontag ED, Monotone systems under positive feedback: multistability and a reduction theorem. Syst Control Lett 2005; 54: 159-168
-
(2005)
Syst Control Lett
, vol.54
, pp. 159-168
-
-
Enciso, G.A.1
Sontag, E.D.2
-
38
-
-
11144226518
-
On the stability of a model of testosterone dynamics
-
Enciso GA, Sontag ED. On the stability of a model of testosterone dynamics. J Math Biol 2004; 49: 627-634
-
(2004)
J Math Biol
, vol.49
, pp. 627-634
-
-
Enciso, G.A.1
Sontag, E.D.2
-
39
-
-
0023531427
-
Chemical reaction network structure and the stabiliy of complex isothermal reactors - I. The deficiency zero and deficiency one theorems
-
Feinbcrg M. Chemical reaction network structure and the stabiliy of complex isothermal reactors - I. The deficiency zero and deficiency one theorems. Chem Eng Sci 1987: 42: 2229-2268
-
(1987)
Chem Eng Sci
, vol.42
, pp. 2229-2268
-
-
Feinbcrg, M.1
-
40
-
-
0032496358
-
The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes
-
Ferrell Jr JE, Machleder EM. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science 1998; 280: 895-898
-
(1998)
Science
, vol.280
, pp. 895-898
-
-
Ferrell Jr., J.E.1
Machleder, E.M.2
-
41
-
-
0030445778
-
Tripping the switch fantastic: How a protein kinase cascade can convert graded inputs into switch-like outputs
-
Ferrell Jr, JE. Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs. Trends Biochem Sci 1996; 21: 460-466
-
(1996)
Trends Biochem Sci
, vol.21
, pp. 460-466
-
-
Ferrell Jr., J.E.1
-
42
-
-
0032110391
-
Cyclic feedback systems
-
Gedeon T. Cyclic feedback systems. Mem Amer Math Soc 1998; 13: 1-73
-
(1998)
Mem Amer Math Soc
, vol.13
, pp. 1-73
-
-
Gedeon, T.1
-
43
-
-
33645407079
-
Oscillation in multi-stable monotone system with slowly varying positive feedback
-
in preparation. Abstract, New Orleans, July
-
Gedeon T, Sontag ED. Oscillation in multi-stable monotone system with slowly varying positive feedback, in preparation. Abstract in: Sixth SIAM conference on control and its applications, New Orleans, July, 2005
-
(2005)
Sixth SIAM Conference on Control and Its Applications
-
-
Gedeon, T.1
Sontag, E.D.2
-
45
-
-
0002194865
-
Positive and negative circuits in dynamical systems
-
Gouzé JL. Positive and negative circuits in dynamical systems. J Biol Sys 1998; 6: 11-15
-
(1998)
J Biol Sys
, vol.6
, pp. 11-15
-
-
Gouzé, J.L.1
-
46
-
-
0034614637
-
The hallmarks of cancer
-
Hanahan D, Weinberg RA. The hallmarks of cancer. Cell 2000; 100: 57-70
-
(2000)
Cell
, vol.100
, pp. 57-70
-
-
Hanahan, D.1
Weinberg, R.A.2
-
48
-
-
0002703577
-
Existence of periodic solutions for negative feedback cellular control systems
-
Hastings S, Tyson J, Webester D. Existence of periodic solutions for negative feedback cellular control systems. J Diff Eqs 1977; 25: 39-64
-
(1977)
J Diff Eqs
, vol.25
, pp. 39-64
-
-
Hastings, S.1
Tyson, J.2
Webester, D.3
-
49
-
-
0036285634
-
Mathematical models of protein kinase signal transduction
-
Heinrich R, Neel BG, Rapoport TA. Mathematical models of protein kinase signal transduction. Mol Cell 2002; 9: 957-970
-
(2002)
Mol Cell
, vol.9
, pp. 957-970
-
-
Heinrich, R.1
Neel, B.G.2
Rapoport, T.A.3
-
50
-
-
0001176145
-
Systems of differential equations that are competitive or cooperative II: Convergence almost everywhere
-
Hirsch M. Systems of differential equations that are competitive or cooperative II: convergence almost everywhere. SIAM J Math Anal 1985; 16: 423-439
-
(1985)
SIAM J Math Anal
, vol.16
, pp. 423-439
-
-
Hirsch, M.1
-
51
-
-
0042171088
-
Differential equations and convergence almost everywhere in strongly monotone flows
-
Hirsch M. Differential equations and convergence almost everywhere in strongly monotone flows. Contemporary Math 1983; 17: 267-285
-
(1983)
Contemporary Math
, vol.17
, pp. 267-285
-
-
Hirsch, M.1
-
52
-
-
66049141596
-
Monotone dynamical systems
-
Elsevier, to appear
-
Hirsch M, Smith HL. Monotone dynamical systems. In: Handbook of differential equations, ordinary differential equations, vol 2. Elsevier, 2005, to appear
-
(2005)
Handbook of Differential Equations, Ordinary Differential Equations
, vol.2
-
-
Hirsch, M.1
Smith, H.L.2
-
54
-
-
0029790351
-
Ultrasensitivity in the mitogen-activated protein kinase cascade
-
Huang C-YF, Ferrell Jr JE. Ultrasensitivity in the mitogen-activated protein kinase cascade. Proc Natl Acad Sci USA 1996; 93: 10078-10083
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 10078-10083
-
-
Huang, C.-Y.F.1
Ferrell Jr., J.E.2
-
55
-
-
0035709023
-
A general framework for achieving integral control in chemotactic biological signaling mechanisms
-
Orlando, USA.
-
Iglesias PA, Levchenko A. A general framework for achieving integral control in chemotactic biological signaling mechanisms. In: Proceedings of the IEEE conference on decision and control, Orlando, USA. 2001, pp 843-848
-
(2001)
Proceedings of the IEEE Conference on Decision and Control
, pp. 843-848
-
-
Iglesias, P.A.1
Levchenko, A.2
-
56
-
-
84959812821
-
On the global stability of cooperative systems
-
Jiang JF. On the global stability of cooperative systems. Bull London Math Soc 1994; 6: 455-458
-
(1994)
Bull London Math Soc
, vol.6
, pp. 455-458
-
-
Jiang, J.F.1
-
57
-
-
4444311806
-
A proposal for using the ensemble approach to understand genetic regulatory networks
-
Kauffman SA. A proposal for using the ensemble approach to understand genetic regulatory networks. J Theo Bio 2004; 230: 581-590
-
(2004)
J Theo Bio
, vol.230
, pp. 581-590
-
-
Kauffman, S.A.1
-
59
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
Kepler TB, Elston TC. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys J 2001; 81: 3116-3136
-
(2001)
Biophys J
, vol.81
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
60
-
-
0034019315
-
Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
-
Kholodenko BN. Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. Eur J Biochem 2000; 267: 1583-1588
-
(2000)
Eur J Biochem
, vol.267
, pp. 1583-1588
-
-
Kholodenko, B.N.1
-
61
-
-
0036789922
-
Untangling the wires: A novel strategy to trace functional interactions in signaling and gene networks
-
Kholodenko BN, Kiyatkin A, Bruggeman F, Sontag ED, Westerhoff H, Hoek J. Untangling the wires: a novel strategy to trace functional interactions in signaling and gene networks. Proc Nat Acad Sci USA 2002; 99: 12841-12846
-
(2002)
Proc Nat Acad Sci USA
, vol.99
, pp. 12841-12846
-
-
Kholodenko, B.N.1
Kiyatkin, A.2
Bruggeman, F.3
Sontag, E.D.4
Westerhoff, H.5
Hoek, J.6
-
62
-
-
0034914737
-
A computational study of feedback effects on signal dynamics in a mitogen-activated protein kinase (MAPK) pathway model
-
Lauffenburger DA. A computational study of feedback effects on signal dynamics in a mitogen-activated protein kinase (MAPK) pathway model. Biotechnol Prog 2001; 17: 227-239
-
(2001)
Biotechnol Prog
, vol.17
, pp. 227-239
-
-
Lauffenburger, D.A.1
-
63
-
-
0034625005
-
Cell signaling pathways as control modules: Complexity for simplicity
-
Lauffenburger DA. Cell signaling pathways as control modules: Complexity for simplicity. Proc Natl Acad Sci USA 2000; 97: 5031-5033
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 5031-5033
-
-
Lauffenburger, D.A.1
-
65
-
-
0001051330
-
The Poincaré-Bendixson theorem for monotone cyclic feedback systems
-
Mallet-Paret J, Smith HL. The Poincaré-Bendixson theorem for monotone cyclic feedback systems. J Dynam Diff Eqns 1990; 2: 367-421
-
(1990)
J Dynam Diff Eqns
, vol.2
, pp. 367-421
-
-
Mallet-Paret, J.1
Smith, H.L.2
-
66
-
-
0142027814
-
Structure and function of the feedforward loop network motif
-
Mangan S, Alon U. Structure and function of the feedforward loop network motif. Proc Natl Acad Sci USA 2003; 100: 11980-11985
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11980-11985
-
-
Mangan, S.1
Alon, U.2
-
67
-
-
0242364231
-
The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks
-
Mangan S, Zaslaver A, Alon U. The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. J Mol Biol 2003; 334: 197-204
-
(2003)
J Mol Biol
, vol.334
, pp. 197-204
-
-
Mangan, S.1
Zaslaver, A.2
Alon, U.3
-
68
-
-
0029063148
-
Kinetic proofreading in T-cell receptor signal transduction
-
McKeithan TW. Kinetic proofreading in T-cell receptor signal transduction. Proc Natl Acad Sci USA 1995; 92: 5042-5046
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 5042-5046
-
-
McKeithan, T.W.1
-
69
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U. Network motifs: simple building blocks of complex networks. Science 2002; 298: 824-827
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
-
71
-
-
0001389945
-
Enzyme induction as an all-or-none phenomenon
-
Novick A, Wiener M. Enzyme induction as an all-or-none phenomenon. Proc Natl Acad Sci USA 1957; 43: 553-566
-
(1957)
Proc Natl Acad Sci USA
, vol.43
, pp. 553-566
-
-
Novick, A.1
Wiener, M.2
-
72
-
-
0017238828
-
The qualitative dynamics of a class of biochemical control circuits
-
Othmer HG. The qualitative dynamics of a class of biochemical control circuits. J Math Biol 1976; 3: 53-78
-
(1976)
J Math Biol
, vol.3
, pp. 53-78
-
-
Othmer, H.G.1
-
73
-
-
0345700833
-
Building a cell cycle oscillator: Hysteresis and bistability in the activation of Cdc2
-
Pomerening JR, Sontag ED, Ferrell Jr JE. Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2. Nat Cell Biol 2003; 5: 346-351
-
(2003)
Nat Cell Biol
, vol.5
, pp. 346-351
-
-
Pomerening, J.R.1
Sontag, E.D.2
Ferrell Jr., J.E.3
-
75
-
-
0037078982
-
Control, exploitation and tolerance of intracellular noise
-
Rao CV, Wolf DM, Arkin AP. Control, exploitation and tolerance of intracellular noise. Nature 2002; 420: 231-237
-
(2002)
Nature
, vol.420
, pp. 231-237
-
-
Rao, C.V.1
Wolf, D.M.2
Arkin, A.P.3
-
76
-
-
0016715719
-
A theoretical investigation of a large class of biochemical oscillations
-
Rapp PE. A theoretical investigation of a large class of biochemical oscillations. Math Biosci 1975; 25: 165-188
-
(1975)
Math Biosci
, vol.25
, pp. 165-188
-
-
Rapp, P.E.1
-
80
-
-
0037417803
-
Hysteresis drives cell-cycle transitions in xenopus laevis egg extracts
-
Sha W, Moore J. Chen K, Lassaletta AD, Yi CS. Tyson JJ, Sible JC. Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts. Proc Natl Acad Sci USA 2003; 100: 975-980
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 975-980
-
-
Sha, W.1
Moore, J.2
Chen, K.3
Lassaletta, A.D.4
Yi, C.S.5
Tyson, J.J.6
Sible, J.C.7
-
81
-
-
4243214752
-
-
Preprint, MIT Chemical Engineering Department, December
-
Shvartsman SY, Wiley HS, Lauffenburger DA. Autocrine loop as a module for bidirectional and context-dependent cell signaling. Preprint, MIT Chemical Engineering Department, December, 2000
-
(2000)
Autocrine Loop As A Module for Bidirectional and Context-dependent Cell Signaling
-
-
Shvartsman, S.Y.1
Wiley, H.S.2
Lauffenburger, D.A.3
-
82
-
-
0023080895
-
Oscillations and multiple steady states in a cyclic gene model with repression
-
Smith HL. Oscillations and multiple steady states in a cyclic gene model with repression. J Math Biol 1987; 25: 169-190
-
(1987)
J Math Biol
, vol.25
, pp. 169-190
-
-
Smith, H.L.1
-
83
-
-
0003726932
-
Monotone dynamical systems: An introduction to the theory of competitive and cooperative systems
-
AMS, Providence, RI
-
Smith HL, Monotone dynamical systems: an introduction to the theory of competitive and cooperative systems, Mathematical Surveys and Monographs, vol 41, AMS, Providence, RI, 1995
-
(1995)
Mathematical Surveys and Monographs
, vol.41
-
-
Smith, H.L.1
-
84
-
-
0141480040
-
The role of certain post classes in Boolean network models of genetic networks
-
Shmulevich I, Lähdesmäki H, Dougherty ER, Astola J, Zhang W. The role of certain Post classes in Boolean network models of genetic networks. Proc Natl Acad Sci USA 2003; 100: 10734-10739
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 10734-10739
-
-
Shmulevich, I.1
Lähdesmäki, H.2
Dougherty, E.R.3
Astola, J.4
Zhang, W.5
-
85
-
-
4344706221
-
Activities and sensitivities in Boolean network models
-
Shmulevich I, Kauffman SA. Activities and sensitivities in Boolean network models. Phys Rev Lett 2004; 93: 048701-048704
-
(2004)
Phys Rev Lett
, vol.93
, pp. 048701-048704
-
-
Shmulevich, I.1
Kauffman, S.A.2
-
86
-
-
0001923376
-
Necessary conditions for multistationarity and stable periodicity
-
Snoussi EH. Necessary conditions for multistationarity and stable periodicity. J Biol Syst 1998; 6: 3-9
-
(1998)
J Biol Syst
, vol.6
, pp. 3-9
-
-
Snoussi, E.H.1
-
89
-
-
0035390982
-
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction
-
Erratum in IEEE Trans Autom Control 2002; 47: 705-705
-
Sontag ED. Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction. IEEE Trans Autom Control 2001; 46: 1028-1047. Erratum in IEEE Trans Autom Control 2002; 47: 705-705
-
(2001)
IEEE Trans Autom Control
, vol.46
, pp. 1028-1047
-
-
Sontag, E.D.1
-
90
-
-
0042848806
-
For differential equations with r parameters, 2r + 1 experiments are enough for identification
-
Sontag ED. For differential equations with r parameters, 2r + 1 experiments are enough for identification. J Nonlinear Science 2002; 12: 553-583
-
(2002)
J Nonlinear Science
, vol.12
, pp. 553-583
-
-
Sontag, E.D.1
-
91
-
-
0043013344
-
Adaptation and regulation with signal detection implies internal model
-
Sontag ED. Adaptation and regulation with signal detection implies internal model. Syst Control Lett 2003; 50: 119-126
-
(2003)
Syst Control Lett
, vol.50
, pp. 119-126
-
-
Sontag, E.D.1
-
92
-
-
10444264607
-
Some new directions in control theory inspired by systems biology
-
Sontag ED. Some new directions in control theory inspired by systems biology. Syst Biol 2004; 1: 9-18
-
(2004)
Syst Biol
, vol.1
, pp. 9-18
-
-
Sontag, E.D.1
-
93
-
-
4444226267
-
Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data
-
Sontag ED, Kiyatkin A. Kholodenko BN. Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data. Bioinformatics 2004; 20: 1877-1886
-
(2004)
Bioinformatics
, vol.20
, pp. 1877-1886
-
-
Sontag, E.D.1
Kiyatkin, A.2
Kholodenko, B.N.3
-
97
-
-
27244462819
-
The secant condition for instability in biochemical feedback-control. 1. The role of cooperativity and saturability
-
Thron CD. The secant condition for instability in biochemical feedback-control. 1. The role of cooperativity and saturability. Bull Math Biol 1991; 53: 383-401
-
(1991)
Bull Math Biol
, vol.53
, pp. 383-401
-
-
Thron, C.D.1
-
98
-
-
0002275384
-
The dynamics of feedback control circuits in biochemical pathways
-
Rosen R, Snell FM (eds). Academic Press, New York
-
Tyson JJ, Othmer HG. The dynamics of feedback control circuits in biochemical pathways. In: Rosen R, Snell FM (eds). Progress in theoretical biology, vol 5. Academic Press, New York, 1978, pp 1-62
-
(1978)
Progress in Theoretical Biology
, vol.5
, pp. 1-62
-
-
Tyson, J.J.1
Othmer, H.G.2
-
101
-
-
0034644270
-
The segment polarity network is a robust developmental module
-
von Dassow G, Meir E, Munro EM, Odell GM. The segment polarity network is a robust developmental module. Nature 2000; 406: 188-192
-
(2000)
Nature
, vol.406
, pp. 188-192
-
-
Von Dassow, G.1
Meir, E.2
Munro, E.M.3
Odell, G.M.4
-
102
-
-
0032928614
-
Mitogen-activated protein kinase: Conservation of a three-kinase module from yeast to human
-
Widmann C, Spencer G, Jarpe MB, Johnson GL. Mitogen-activated protein kinase: conservation of a three-kinase module from yeast to human. Physiol Rev 1999; 79: 143-180
-
(1999)
Physiol Rev
, vol.79
, pp. 143-180
-
-
Widmann, C.1
Spencer, G.2
Jarpe, M.B.3
Johnson, G.L.4
-
103
-
-
0004279072
-
-
Current Biology Ltd., London
-
Wolpert L, Beddington R, Brockes J, Jessell T, Lawrence P, Meyerowitz E. Principles of development. Current Biology Ltd., London, 1998
-
(1998)
Principles of Development
-
-
Wolpert, L.1
Beddington, R.2
Brockes, J.3
Jessell, T.4
Lawrence, P.5
Meyerowitz, E.6
-
104
-
-
0034712843
-
Robust perfect adaptation in bacterial chemotaxis through integral feedback control
-
Yi T-M, Huang Y, Simon MI, Doyle J. Robust perfect adaptation in bacterial chemotaxis through integral feedback control, Proc Natl Acad Sci USA 2000; 97: 4649-4653
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 4649-4653
-
-
Yi, T.-M.1
Huang, Y.2
Simon, M.I.3
Doyle, J.4
-
105
-
-
0012029771
-
A logical model of cis-regulatory control in a eukaryotic system
-
Bower JM, Bolouri H (eds). MIT Press, Cambridge, MA
-
Yuh CH, Bolouri H, Bower JM, Davidson EH, A logical model of cis-regulatory control in a eukaryotic system. In Bower JM, Bolouri H (eds). Computational modeling of genetic and biochemical Networks. MIT Press, Cambridge, MA, 2001, pp 73-100
-
(2001)
Computational Modeling of Genetic and Biochemical Networks
, pp. 73-100
-
-
Yuh, C.H.1
Bolouri, H.2
Bower, J.M.3
Davidson, E.H.4
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