Inorganic polyphosphate interacts with ribosomes and promotes translation fidelity in vitro and in vivo

Molecular Microbiology

Volumn 60, Issue 2, 2006, Pages 438-447

  McInerney, Peter ^a   Mizutani, Taeko ^a   Shiba, Toshikazu ^a,b  

^a FUJIREBIO INC   (Japan)

^b Regenetiss Inc   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MESSENGER RNA; POLYPHENYLALANINE; POLYPHOSPHATE; RIBOSOME PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SYNTHESIS; ARTICLE; CODON; CONTROLLED STUDY; ESCHERICHIA COLI; IN VITRO STUDY; IN VIVO STUDY; MUTANT; MUTATION; NONHUMAN; POLYSOME; PRIORITY JOURNAL; PROTEIN SYNTHESIS; RIBOSOME; WILD TYPE;

ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); POLYPHOSPHATES; POLYRIBOSOMES; PROTEIN BIOSYNTHESIS; RIBOSOMES;

ESCHERICHIA COLI;

EID: 33645314652     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2006.05103.x     Document Type: Article

References (25)

1. Ault-Riche D. Fraley C.D. Tzeng C.M. Kornberg A. 1998 Novel assay reveals multiple pathways regulating stress-induced accumulations of inorganic polyphosphate in Escherichia coli. J Bacteriol 180 1841 1847.
2. Barritault D. Expert-Bezancon A. Guerin M.F. Hayes D. 1976 The use of acetone precipitation in the isolation of ribosomal proteins. Eur J Biochem 63 131 135.
3. Blum E. Py B. Carpousis A.J. Higgins C.F. 1997 Polyphosphate kinase is a component of the Escherichia coli RNA degradosome. Mol Microbiol 26 387 398.
4. Brown M.R. Kornberg A. 2004 Inorganic polyphosphate in the origin and survival of species. Proc Natl Acad Sci USA 101 16085 16087.
5. Crooke E. Akiyama M. Rao N.N. Kornberg A. 1994 Genetically altered levels of inorganic polyphosphate in Escherichia coli. J Biol Chem 269 6290 6295.
6. Hirsh D. Gold L. 1971 Translation of the UGA triplet in vitro by tryptophan transfer RNA's. J Mol Biol 58 459 468.
7. Itoh H. Kawazoe Y. Shiba T. 2006 Enhancement of protein synthesis by an inorganic polyphosphate in an E. coli cell-free system. J Microbiol Methods 64 241 249.
8. Kornberg A. Kornberg S.R. Simms E.S. 1956 Metaphosphate synthesis by an enzyme from Escherichia coli. Biochim Biophys Acta 20 215 227.
9. Kornberg A. Rao N.N. Ault-Riche D. 1999 Inorganic polyphosphate: a molecule of many functions. Annu Rev Biochem 68 89 125.
10. Kulaev I.S. Vagabov V. Kulakovskaya T. 2004 The Biochemistry of Inorganic Polyphosphates 2nd edn. Hoboken, NJ John Wiley & Sons.
11. Kurland C.G. Hughes D. Ehrenberg M. 1996 Limitations of translational accuracy. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology. Neidhardt F.C. Curtiss R. III. Ingraham J.L. Lin E.C.C. Low K.B. Magasanik B. (eds). Washington, DC American Society for Microbiology Press pp. 979 1004.
12. Kuroda A. Murphy H. Cashel M. Kornberg A. 1997 Guanosine tetra- and pentaphosphate promote accumulation of inorganic polyphosphate in Escherichia coli. J Biol Chem 272 21240 21243.
13. Kuroda A. Nomura K. Ohtomo R. Kato J. Ikeda T. Takiguchi N. et al. 2001 Role of inorganic polyphosphate in promoting ribosomal protein degradation by the Lon protease in E. coli. Science 293 705 708.
14. Kusano S. Ishihama A. 1997 Functional interaction of Escherichia coli RNA polymerase with inorganic polyphosphate. Genes Cells 2 433 441.
15. Miller J.H. 1972 Experiments in Molecular Genetics. Cold Spring Harbor, New York Cold Spring Harbor Press.
16. Moore P.B. Steitz T.A. 2003 The structural basis of large ribosomal subunit function. Annu Rev Biochem 72 813 850.
17. Nilsson M. Ryden-Aulin M. 2003 Glutamine is incorporated at the nonsense codons UAG and UAA in a suppressor-free Escherichia coli strain. Biochim Biophys Acta 1627 1 6.
18. Nomura K. Kato J. Takiguchi N. Ohtake H. Kuroda A. 2004 Effects of inorganic polyphosphate on the proteolytic and DNA-binding activities of Lon in Escherichia coli. J Biol Chem 279 34406 34410.
19. O'Connor M. Goringer H.U. Dahlberg A.E. 1992 A ribosomal ambiguity mutation in the 530 loop of E. coli 16S rRNA. Nucleic Acids Res 20 4221 4227.
20. Pape T. Wintermeyer W. Rodnina M. 1999 Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J 18 3800 3807.
21. Rao N.N. Kornberg A. 1996 Inorganic polyphosphate supports resistance and survival of stationary-phase Escherichia coli. J Bacteriol 178 1394 1400.
22. Rao N.N. Roberts M.F. Torriani A. 1985 Amount and chain length of polyphosphates in Escherichia coli depend on cell growth conditions. J Bacteriol 162 242 247.
23. Rodnina M.V. Wintermeyer W. 2001 Fidelity of aminoacyl-tRNA selection on the ribosome: kinetic and structural mechanisms. Annu Rev Biochem 70 415 435.
24. Shiba T. Tsutsumi K. Yano H. Ihara Y. Kameda A. Tanaka K. et al. 1997 Inorganic polyphosphate and the induction of rpoS expression. Proc Natl Acad Sci USA 94 11210 11215.
25. Tanaka K. Handel K. Loewen P.C. Takahashi H. 1997 Identification and analysis of the rpoS-dependent promoter of katE, encoding catalase HPII in Escherichia coli. Biochim Biophys Acta 1352 161 166.