MONTE-CARLO simulations of gel-electrophoresis of DNA knots

Physical And Numerical Models In Knot Theory: Including Applications To The Life Sciences

Volumn , Issue , 2005, Pages 149-159

  Weber, C ^a   Fleurant, M ^a   De Los Rios, P ^a   Dietler, G ^a  

^a EPFL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33645280541     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1142/9789812703460_0008     Document Type: Chapter

References (27)

1. Noolandi, J., Rousseau, J., Slater, G.W., Turmel, C, & Lalande, M., (1987) Phys. Rev. Lett. 58, 2428-2431.
2. Deutsch, J.M., (1988) Science 240, 922-924.
3. Viovy, J.L., (1988) Phys. Rev. Lett. 60, 855-858.
4. Doi, M., Kobayashi, T., Makino, Y., Ogawa, M., Slater, G.W., & Noolandi, J., (1988) Phys. Rev. Lett. 61, 1893-1896.
5. Noolandi, J., Slater, G.W., Lim, H.A., & Joanny, J.-F., (1989) Science 243, 1456-1458.
6. Duke, T.A.J. & Viovy, J.L., (1992) Phys. Rev. Lett. 68, 542-545.
7. Aalberts, D.P., (1995) Phys. Rev. Lett. 75, 4544-4547.
8. Semenov, A.N. & Joanny, J.-F., (1997) Phys Rev. E 55, 789-799.
9. Schwartz, D.C. & Koval, M., (1989) Nature 338, 520-522.
10. Smith, S.B., Aldridge, P.K., & Callis, J.B., (1989) Science 243, 203-206.
11. Sturm, J. & Weill, G., (1989) Phys. Rev. Lett. 62, 1484-1487.
12. Wang Z.L., & Chu, B., (1989) Phys. Rev. Lett. 63, 2528-2531.
13. Dean, F.B., Stasiak, A., Koller, T., & Cozzarelli, N.R., (1985) J. Biol. Chem. 260, 4975-4983.
14. Spengler, S.J., Stasiak, A., & Cozzarelli, N.R., (1985) Cell 42, 325-334.
15. Duplantier, B., Jannink, G., & Sikorav, J.L., (1995) Biophys. J. 69, 1596-1605.
16. Arsuaga, J., Vazquez, M., Trigueros, S., Sumners, D., & Roca, J., (2002) PNAS 99, 5373-5377.
17. Trigueros, S., Arsuaga, J., Vazquez, M.E., Sumners, D.W., & Roca, J., (2001) Nucl. Acid. Res. 29, e67.
18. Stasiak, A., Katritch, V., Bednar, J., Michoud, M., & Dubochet, J., (1996) Nature 384, 122-122.
19. De la Torre, J.G., & Bloomfield, V.A., (1981) Quarterly Reviews of Biophysics 14, 81-139.
20. Vologodskii, A.V., Crisona, N.J., Laurie, B., Pieranski, P., Katritch, V., Dubochet, J., & Stasiak, A., (1998) J. Mol. Biol. 278, 1-3.
21. Sogo, J., Stasiak, A., Martinez-Robles, M.L., Krimer, D.B., Hernandez, P., & Schvartzman, J.B., (1999) J. Mol. Biol. 286, 637-643.
22. This value is estimated from Atomic Force Images of complex knots. The knots were kindly provided by Dr. J. Roca and the AFM images were taken by Dr. F. Valle.
23. Berg, B., & Foerster, D., (1981) Phys. Lett. B 106, 323-326;
24. Aragão de Carvalho, C., Caracciolo, S., & Fröhlich, J., (1983) Nucl. Phys. B 215, 209-248;
25. Lim, H.A., (1996) Intl. J. Mod. Phys. C 7, 217-271 and references therein.
26. van Rensburg, E.J.J., & Whittington, S.G., (1991) J. Phys. A 24, 5553-5567.
27. Alexander, J.W., (1923) Trans. Amer. Math. Soc. 20, 275-306.