Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii

Parasitology Research

Volumn 98, Issue 5, 2006, Pages 414-424

  Vanholme, Bartel ^a   Mitreva, Makedonka ^b   Van Criekinge, Wim ^a   Logghe, Marc ^c   Bird, David ^d   McCarter, James P ^b   Gheysen, Godelieve ^a  

^a GHENT UNIVERSITY   (Belgium)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c Devgen NV   (Belgium)

^d NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; AMINO ACID; COMPLEMENTARY DNA; GLUCAN SYNTHASE; MEMBRANE PROTEIN; POLYPEPTIDE; PROTEIN; RIBOSOME PROTEIN; RIBOSOME RNA; RNA; SIGNAL PEPTIDE;

ARTICLE; BEET; BIOINFORMATICS; CELL WALL; DNA LIBRARY; ENZYME ACTIVITY; ENZYME SUBUNIT; EXPRESSED SEQUENCE TAG; HETERODERA SCHACHTII; HIGH THROUGHPUT SCREENING; HOST PARASITE INTERACTION; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT PARASITIC PLANT DISEASE; PRIORITY JOURNAL; PROTEIN SECRETION; SEQUENCE HOMOLOGY;

ANIMALS; COMPUTATIONAL BIOLOGY; CONTIG MAPPING; DNA, HELMINTH; EXPRESSED SEQUENCE TAGS; GENE LIBRARY; GLYCOSIDE HYDROLASES; HELMINTH PROTEINS; PLANTS; PROTEIN SORTING SIGNALS; PROTEIN STRUCTURE, TERTIARY; TYLENCHOIDEA;

ANIMALIA; BETA (ANGIOSPERM); BETA VULGARIS SUBSP. VULGARIS; HETERODERA SCHACHTII;

EID: 33645243360     PISSN: 09320113     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00436-005-0029-3     Document Type: Article

References (57)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7:986-995
3. Bendtsen JD, Nielsen H, von Heijne G, Brunak S (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340:783-795
4. Blair L, Perry RN, Oparka K, Jones J (1999) Activation of transcription during the hatching process of the potato cyst nematode Globodera rostochiensis. Nematology 1:103-111
5. Blumenthal T, Steward K (1997) RNA processing and gene structure. In: Riddle TL, Blumenstiel B, Meyer BJ, Priess JR (eds) C. elegans. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
6. Dautova M, Rosso MN, Abad P, Gommers FJ, Bakker J, Smant G (2001) Single pass cDNA sequencing - a powerful tool to analyse gene expression in pre-parasitic juveniles of the southern root-knot nematode Meloidogyne incognita. Nematology 3:129-139
7. de Boer JM, McDermott JP, Wang XH, Maier T, Qu F, Hussey RS, Davis EL, Baum TJ (2002a) The use of DNA microarrays for the developmental expression analysis of cDNAs from the oesophageal gland cell region of Heterodera glycines. Mol Plant Pathol 3:261-270
8. de Boer JM, McDermott JP, Davis EL, Hussey RS, Smant G, Baum TJ (2002b) Cloning of a putative pectate lyase gene expressed in the subventral esophageal glands of Heterodera glycines. J Nematol 33:9-11
9. De Meutter J, Tytgat T, Van der Schueren E, Smant G, Schots A, Coomans A, Van Montagu M, Gheysen G (1999) Cloning of two endoglucanase genes from Heterodera schachtii. Meded Rijksuniv Gent Fak Landbouwkd Toegep Biol Wet 63:619-623
10. De Meutter J, Vanholme B, Bauw G, Tytgat T, Gheysen G, Gheysen G (2001) Preparation and sequencing of secreted proteins from the pharyngeal glands of the plant parasitic nematode Heterodera schachtii. Mol Plant Pathol 2:297-301
11. Ding X, Shields J, Allen R, Hussey RS (1998) A secretory cellulose-binding protein cDNA cloned from the root-knot nematode (Meloidogyne incognita). Mol Plant Microbe Interact 11:952-959
12. Fang KS, Vitale M, Fehlner P, King TP (1988) cDNA cloning and primary structure of a white-face hornet venom allergen, antigen 5. Proc Natl Acad Sci U S A 85:895-899
13. Fernandez C, Gregory WF, Loke P, Maizels RM (2002) Full-length-enriched cDNA libraries from Echinococcus granulosus contain separate populations of oligo-capped and trans-spliced transcripts and a high level of predicted signal peptide sequences. Mol Biochem Parasitol 122:171-180
14. Gao B, Allen R, Maier T, Davis EL, Baum TJ, Hussey RS (2001) Molecular characterisation and expression of two venom allergen-like protein genes in Heterodera glycines. Int J Parasitol 31:1617-1625
15. Gao B, Allen R, Maier T, McDermott JP, Davis EL, Baum TJ, Hussey RS (2002) Characterisation and developmental expression of a chitinase gene in Heterodera glycines. Int J Parasitol 32:1293-1300
16. Gao B, Allen R, Maier T, Davis EL, Baum TJ, Hussey RS (2003) The parasitome of the phytonematode Heterodera glycines. Mol Plant Microbe Interact 16:720-726
17. Gao B, Allen R, Davis EL, Baum TJ, Hussey RS (2004) Molecular characterisation and developmental expression of a cellulose-binding protein gene in the soybean cyst nematode Heterodera glycines. Int J Parasitol 34:1377-1383
18. Harcus YM, Parkinson J, Fernandez C, Daub J, Selkirk ME, Blaxter ML, Maizels RM (2004) Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted proteins in parasites. Genome Biol 5:R39
19. Hawdon JM, Jones BF, Hoffman DR, Hotez PJ (1996) Cloning and characterization of Ancylostoma-secreted protein. A novel protein associated with the transition to parasitism by infective hookworm larvae. J Biol Chem 271:6672-6678
20. Huang X, Madan A (1999) CAPS: A DNA sequence assembly program. Genome Res 9:868-877
21. Huang G, Gao B, Maier T, Allen R, Davis EL, Baum TJ, Hussey RS (2003) A profile of putative parasitism genes expressed in the esophageal gland cells of the root-knot nematode Meloidogyne incognita. Mol Plant Microbe Interact 16:376-381
22. Jasmer DP, Goverse A, Smant G (2003) Parasitic nematode interactions with mammals and plants. Annu Rev Phytopathol 41:245-270
23. Jaubert S, Ledger TN, Laffaire JB, Piotte C, Abad P, Rosso MN (2002) Direct identification of stylet secreted proteins from root-knot nematodes by a proteomic approach. Mol Biochem Parasitol 121:205-211
24. Jaubert S, Milac AL, Petrescu AJ, de Almeida-Engler J, Abad P, Rosso MN (2005) In planta secretion of a calreticulin by migratory and sedentary stages of root-knot nematode. Mol Plant Microbe Interact 18:1277-1283
25. Jones JT, Smant G, Block V (2000) SXP/RAL2 proteins of the potato cyst nematode Globodera rostochiensis: secreted proteins of the hypodermis and amphids. Nematology 2:887-893
26. Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567-580
27. Ladunga I (2000) Large-scale predictions of secretory proteins from mammalian genomic and EST sequences. Curr Opin Biotechnol 11:13-18
28. Lall S, Friedman CC, Jankowska-Anyszka M, Stepinski J, Darzynkiewicz E, Davis RE (2004) Contribution of trans-splicing, 5′-leader length, cap-poly(A) synergism, and initiation factors to nematode translation in an Ascaris suum embryo cell-free system. J Biol Chem 279:45573-45585
29. Lilley CJ, Urwin PE, McPherson MJ, Atkinson HJ (1996) Characterization of intestinally active proteinases of cyst-nematodes. Parasitology 113 (Pt 4):415-424
30. Lilley CJ, Uwin PE, Atkinson HJ (2004) Preferential expression of a plant cystatin at nematode feeding site confers resistance to Meloidogyne incognita and Globodera pallida. Plant Biotechnol J 2:3-12
31. McCarter JP, Mitreva MD, Martin J, Dante M, Wylie T, Rao U, Pape D, Bowers Y, Theising B, Murphy CV, Kloek AP, Chiapelli BJ, Clifton SW, Bird DM, Waterston RH (2003) Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biol 4:R26
32. Mitreva M, Elling AA, Dante M, Kloek AP, Kalyanaraman A, Aluru S, Clifton SW, Bird DM, Baum TJ, McCarter JP (2004a) A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans. Mol Genet Genomics 272:138-148
33. Mitreva M, McCarter JP, Martin J, Dante M, Wylie T, Chiapelli B, Pape D, Clifton SW, Nutman TB, Waterston RH (2004b) Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans. Genome Res 14:209-220
34. Mitreva M, Jasmer DP, Appleton J, Martin J, Dante M, Wylie T, Clifton SW, Waterston RH, McCarter JP (2004c) Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages. Mol Biochem Parasitol 137:277-291
35. Müller J (1999) The economic importance of Heterodera schachtii in Europe. Helminth 36:205-213
36. Nickel W (2003) The mystery of nonclassical protein secretion. A current view on cargo proteins and potential export routes. Eur J Biochem 270:2109-2119
37. Nielsen H, Krogh A (1998) Prediction of signal peptides and signal anchors by a hidden Markov model. Proc Int Conf Intell Syst Mol Biol 6:122-130
38. Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R, Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML (2004) A transcriptomic analysis of the phylum Nematoda. Nat Genet 36:1259-1267
39. Perry RN, Zunke U, Wyss U (1989) Observations on the response of the dorsal and subventral oesophageal glands of Globodera rostochiensis to hatching stimulation. Revue Nématol 12:91-96
40. Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J (2003) TIGR gene indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19:651-652
41. Popeijus H, Overmars H, Jones J, Blok V, Goverse A, Helder J, Schots A, Bakker J, Smant G (2000) Degradation of plant cell walls by a nematode. Nature 406:36-37
42. Prior A, Jones JT, Blok VC, Beauchamp J, McDermott L, Cooper A, Kennedy MW (2001) A surface-associated retinol- and fatty acid-binding protein (Gp-FAR-1) from the potato cyst nematode Globodera pallida: lipid binding activities, structural analysis and expression pattern. Biochem J 356:387-394
43. Qin L, Kudla U, Roze EH, Goverse A, Popeijus H, Nieuwland J, Overmars H, Jones JT, Schots A, Smant G, Bakker J, Helder J (2004) Plant degradation: a nematode expansin acting on plants. Nature 427:30
44. Sambrook J, Fritsch EF, Martin J (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
45. Schwekendiek A, Maier TR, Womack CR, Byrne DH, de Boer JM, Davis EL, Baum TJ (1999) Initial characterisation of endochitinase genes of the plant-parasitic nematode Heterodera glycines. J Nematol 31:568
46. Shpigel E, Roiz L, Goren R, Shoseyov O (1998) Bacterial cellulose-binding domain modulates in vitro elongation of different plant cells. Plant Physiol 117:1185-1194
47. Smant G, Goverse A, Stokkermans JP, de Boer JM (1997) Potato root diffusate-induced secretion of soluble, basic proteins originating from the esophageal glands of potato cyst nematodes. Phytopathology 87:839-845
48. Smant G, Stokkermans JP, Yan Y, de Boer JM, Baum TJ, Wang X, Hussey RS, Gommers FJ, Henrissat B, Davis EL, Helder J, Schots A, Bakker J (1998) Endogenous cellulases in animals: isolation of beta-1, 4-endoglucanase genes from two species of plant-parasitic cyst nematodes. Proc Natl Acad Sci U S A 95:4906-4911
49. The C. elegans Sequencing Consortium (1998) The genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282:2012-2018
50. Thomas JD, Conrad RC, Blumenthal T (1988) The C. elegans trans-spliced leader RNA is bound to Sm and has a trimethylguanosine cap. Cell 54:533-539
51. Torto TA, Li S, Styer A, Huitema E, Testa A, Gow NA, van West P, Kamoun S (2003) EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora. Genome Res 13:1675-1685
52. Tytgat T, Vercauteren I, Vanholme B, De Meutter J, Vanhoutte I, Gheysen G, Borgonie G, Coomans A, Gheysen G (2005) An SXP/RAL2 protein produced by the subventral pharyngeal glands in the plant parasitic root-knot nematode Meloidogyne incognita. Parasitol Res 95: 50-54
53. Urwin PE, Lilley CJ, McPherson MJ, Atkinson HJ (1997) Resistance to both cyst and root-knot nematodes conferred by transgenic Arabidopsis expressing a modified plant cystatin. Plant J 12:455-461
54. Vanholme B, De Meutter J, Tytgat T, Gheysen GD, Vanhoutte I, Gheysen GD (2002) An improved method for whole-mount in situ hybridization of Heterodera schachtii juveniles. Parasitol Res 88:731-733
55. Vanholme B, De Meutter J, Tytgat T, Van Montagu M, Coomans A, Gheysen G (2004). Secretions of plant-parasitic nematodes: a molecular update. Gene 332:13-27
56. Wang SH, Zheng HJ, Dissanayake S, Cheng WF, Tao ZH, Lin SZ, Piessens WF (1997) Evaluation of recombinant chitinase and SXP1 antigens as antimicrofilarial vaccines. Am J Trop Med Hyg 56:474-481
57. Wylie T, Martin JC, Dante M, Mitreva MD, Clifton SW, Chinwalla A, Waterston RH, Wilson RK, McCarter JP (2004) Nematode. net: a tool for navigating sequences from parasitic and free-living nematodes. Nucleic Acids Res 32:D423-D426