Soil organic matter decomposition driven by microbial growth: A simple model for a complex network of interactions

Soil Biology and Biochemistry

Volumn 38, Issue 4, 2006, Pages 803-811

  Neill, Cathy ^a   Gignoux, Jacques ^a  

^a UPMC University Paris 06   (France)

Author keywords

Colimitation; First order kinetics; Maintenance; Monod kinetics; Multiple limitation; Priming effects; Stoichiometry

Indexed keywords

BIOMASS; CELLS; CHEMICAL REACTIONS; ECOSYSTEMS; LARGE SCALE SYSTEMS; MAINTENANCE; MICROORGANISMS; NATURAL RESOURCES; ORGANIC COMPOUNDS; SOILS; STOICHIOMETRY; SUBSTRATES;

COLIMITATION; COMPLEX INTERACTIONS; FIRST ORDER DECAY; FIRST ORDER KINETICS; MIMICKING MECHANISMS; MULTIPLE LIMITATION; PRIMING EFFECTS;

DECOMPOSITION;

KINETICS; SOIL MICROORGANISM; SOIL ORGANIC MATTER;

EID: 33645237485     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2005.07.007     Document Type: Article

References (35)

1. J.P.E. Anderson, and K.H. Domsch A physiological method for the quantitative measurement of microbial biomass in soils Soil Biology and Biochemistry 10 1978 215 221
2. T.H. Anderson, and K.H. Domsch Maintenance carbon requirements of actively-metabolizing microbial populations under in situ conditions Soil Biology and Biochemistry 17 1985 197 203
3. E. Baath Estimation of fungal growth rates in soil using 14C-acetate incorporation into ergosterol Soil Biology and Biochemistry 33 2001 2011 2018
4. M.E. Baird, and S.M. Emsley Towards a mechanistic model of plankton population dynamics Journal of Plankton Research 21 1999 85 126
5. J.M. Bell, J.L. Smith, V.L. Bailey, and H. Bolton Priming effect and C storage in semi-arid no-till spring crop rotations Biology and Fertility of Soils 37 2003 237 244
6. D.K.7 Button Kinetics of nutrient-limited transport and microbial growth Microbiological Reviews 49 1985 270 297
7. J.W. Dalenberg, and G. Jager Priming effect of some organic additions to 14C-labeled soil Soil Biology and Biochemistry 21 1989 443 448
8. M. De Nobili, M. Contin, C. Mondini, and P.C. Brookes Soil microbial biomass is triggered into activity by trce amounts of substrate Soil Biology and Biochemistry 33 2001 1163 1170
9. S. Fontaine, A. Mariotti, and L. Abbadie The priming effect of organic matter: a question of microbial competition ? Soil Biology and Biochemistry 35 2003 837 843
10. S. Fontaine, G. Bardoux, L. Abbadie, and A. Mariotti Carbon input to soil may decrease soil carbon content Ecology Letters 7 2004 314 320
11. S. Fontaine, G. Bardoux, D. Benest, B. Verdier, A. Mariotti, and L. Abbadie Mechanisms of the priming effect in a savannah soil amended with cellulose Soil Science Society of America Journal 68 2004 125 131
12. U. Franko Modelling approaches of soil organic matter turnover within the candy system D.S. Powlson P. Smith J.U. Smith Evaluation of Soil Organic Matter Models 1996 Springer Berlin 247 254
13. J. Gignoux, J. House, D. Hall, D. Masse, H.B. Nacro, and L. Abbadie Design and test of a generic cohort model of soil organic matter decomposition: the Somko model Global Ecology and Biogeography 10 2001 639 660
14. E. Guedon, M. Desvaux, S. Payot, and H. Petitdemange Growth inhibition of Clostridium cellulolyticum by an inefficiently regulated carbon flow Microbiology 145 1999 1831 1838
15. U. Hamer, and B. Marschner Priming effects of sugars, amino acids, organic acids and catechol on the mineralization of lignin and peat Journal of Plant Nutrition and Soil Science 165 2002 261 268
16. U. Hamer, and B. Marschner Priming effects in different soil types induced by fructose, alanine, oxalic acid and catechol additions Soil Biology and Biochemistry 37 2005 445 454
17. M.R. Henn, G. Gleixner, and I.H. Chapela Growth-dependent stable carbon isotope fractionation by basidiomycete fungi: delta C13 pattern and physiological process Applied and Environmental Microbiology 68 2002 4956 4964
18. D.H. Jennings, and G. Lysek Fungal biology: understanding the fungal lifestyle second ed. 1999 Bios Scientific Publishers Ltd Oxford 166 pp.
19. H. Kacser, and J.A. Burns The control of flux Symposium of the Society of Experimental Biology 27 1973 65 104
20. A.L. Koch Microbial physiology and ecology of slow growth Microbiology and Molecular Biology Reviews 61 1997 305
21. S.A.L.M. Kooijman Dynamic Energy and Mass Budgets in Biological Systems second ed. 2000 Cambridge University Press Cambridge 424 pp.
22. K. Kovarova-kovar, and T. Egli Growth kinetics of suspended microbial cells: from sinle-susbtrate-controlled growth to mixed-substrate kinetics Microbiology and Molecular Biology Reviews 62 1998 646 666
23. Y. Kuzyakov, J.K. Friedel, and K. Stahr Review of mechanisms and quantification of priming effects Soil Biology and Biochemistry 32 2000 1485 1498
24. C. Li The DNDC model D.S. Powlson P. Smith J.U. Smith Evaluation of Soil Organic Matter Models 1996 Springer Berlin 263 268
25. L.R. Lynd, P.J. Weimer, W.H. Van Zyl, and I.S. Pretorius Microbial cellulose utilization: fundamentals and biotechnology Microbiology and Molecular Biology Reviews 66 2002 506 577
26. W.B. McGill Review and classification of ten soil organic matter (SOM) models D.S. Powlson P. Smith J.U. Smith Evaluation of Soil Organic Matter Models 1996 Springer Berlin 111 132
27. P. Mitchell, and J. Moyle Osmotic structure and function in bacteria Symposium of the Society for General Microbiology 6 1956 150 180
28. J.A.E. Molina Description of the model NCSOIL D.S. Powlson P. Smith J.U. Smith Evaluation of Soil Organic Matter Models 1996 Springer Berlin 269 274
29. Neill, C., Gignoux, J., 2005. Microbial kinetics: analysis of discrepancies of empirical formalisms. Soil Biology and Biochemistry, submitted.
30. N. Peitersen Continuous cultivation of Trichoderma viride on cellulose Biotechnology and Bioengineering 19 1977 337 348
31. D.S. Powlson P. Smith J.U. Smith Evaluation of Soil Organic Matter Models: Using Existing Long-Term Datasets 1996 Springer Berlin 429 pp.
32. J.B. Russell, and G.M. Cook Energetics of bacterial growth: balance of anabolic and catabolic reactions Microbiological Reviews 59 1995 48 62
33. J.P. Schimel, and M.N. Weintraub The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model Soil Biology and Biochemistry 35 2003 549 563
34. J. Stenström, K. Svensson, and M. Johansson Reversible transition between active and dormant microbial states in soil FEMS Microbiology Ecology 36 2001 93 104
35. J. Wu, P. Brookes, and D. Jenkinson Formation and destruction of microbial biomass during the decomposition of glucose and ryegrass in soil Soil Biology and Biochemistry 25 1993 1435 1441