Identification of genes differentially expressed in wild type and Purkinje cell degeneration mice

Molecules and Cells

Volumn 20, Issue 2, 2005, Pages 219-227

  Xiao, Rui ^a,b,c   Park, Youngsook ^d   Dirisala, Vijaya R ^a,d   Zhang, Ya Ping ^b,c   Um, Sang June ^a   Lee, Hoon Taek ^a   Park, Chankyu ^a  

^a Konkuk University   (South Korea)

^b KUNMING INSTITUTE OF ZOOLOGY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^d Jeju National University   (South Korea)

Author keywords

Agtpbp1; Cerebellum; Gene Expression; Microarray; pcd; Purkinje Cell Degeneration

Indexed keywords

4 CARBOXYGLUTAMIC ACID; ALBUMIN; CALBINDIN; CALCIUM BINDING PROTEIN; SYNAPTOTAGMIN;

ALLELE; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BRAIN; CALCIUM SIGNALING; CELL DEGENERATION; CHROMOSOME ABERRATION; CLUSTER ANALYSIS; CONTROLLED STUDY; DNA MICROARRAY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; METABOLIC ACTIVATION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PERINATAL PERIOD; PHENOTYPE; PHENOTYPIC VARIATION; PURKINJE CELL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; UNINDEXED SEQUENCE; WILD TYPE;

ALLELES; ANIMALS; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC MARKERS; GENOTYPE; MALE; MICE; NERVE DEGENERATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PURKINJE CELLS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

ANIMALIA;

EID: 33645232984     PISSN: 10168478     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Ahmad-Annuar, A., Tabrizi, S. J., and Fisher, E. M. C. (2003) Mouse models as a tool for understanding neurodegenerative diseases. Curr. Opin. Neurol. 16, 451-455.
2. Al-Shahrour, F., Diaz-Uriarte, R., and Dopazo, J. (2004) FatiGO: a web tool for finding significant associations of gene ontology terms with groups of genes. Bioinformatics 20, 578-580.
3. Aruga, J. (2004) The role of Zic genes in neuronal development. Mol. Cell. Neurosci. 26, 205-221.
4. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., et al. (2000) Gene ontology: tool for the unification of biology. Nat. Genet. 25, 25-29.
5. Aktas O., Smorodchenko, A., Brocke, S., Infante-Duarte, C., Topphoff, U., et al. (2005) Neuronal damage in autoimmune neuroinflammation mediated by the death ligand TRAIL. Neuron 46, 421-432.
6. Bagala, C., Kolev, V., Mandinova, A., Soldi, R., Mouta, C., et al. (2003) The alteration translation of synaptotagmin 1 mediates the non-classical release of FGF1. Biochem. Biophys. Res. Commun. 310, 1041-1047.
7. Barlow, C. and Lockhart, D. J. (2002) DNA arrays and neurobiology - what's new and what's next. Curr. Opin. Neurobiol. 12, 554-561.
8. Bastianelli, E. (2003) Distribution of calcium-binding proteins in the cerebellum. The Cerebellum 2, 242-262.
9. Gaillard, O., Moreno, H., Schwaller, B., Llanoe, I., Celio, M. R., et al. (2000) Role of the calcium-binding protein pavalbumin in short-term synaptic plasticity. Proc. Natl. Acad. Sci. USA 97, 13372-13377.
10. Chomczynski, P. and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159.
11. Churchill, G. A. (2002) Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32(Suppl), 490-495.
12. Clowry, G. J. and McHanwell, S. (2004) Brainstem motor nuclei respond differentially to degenerative disease in the mutant mouse wobbler. Neuropathol. Appl. Neurobiol. 30, 148-160.
13. Diaz-Corrales, F., Asanuma, M., Miyazaki, I., Miyoshi, K., and Ogawa, N. (2005) Rotenone induces aggrergation of gamma-tubulin protein and subsequent disorganization of the centrosome: relevance to formation of inclusion bodies and neurodegeneration. Neuroscience 133, 117-135.
14. Eisen, M. B., Spellman, P. T., Brown, P. O., and Botstein, D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95, 14863-14868.
15. Fernandez-Gonzalez, A., La Spada, A. R., Treadaway, J., Higdon, J. C., Harris, B. S., et al. (2002) Purkinje cell degeneration (pcd) phenotypes caused by mutations in the axotomy-induced gene, Nna1. Science 295, 1904-1906.
16. Greer, C. A. and Shepherd, G. M. (1982) Mitral cell degeneration and sensory function in the neurological mutant mouse Purkinje cell degeneration (pcd). Brain Res. 235, 156-161.
17. Handel, M. A. and Dawson, M. (1981) Effects on spermiogenesis in the mouse of a male sterile neurological mutation, Purkinje cell degeneration. Gamete Res. 4, 185-192.
18. Harris, A., Morgan, J. I., Pecot, M., Soumare, A., Osborne, A., et al. (2000) Regenerating motor neurons express Nna1, a novel ATP/GTP-binding protein related to zinc carboxypeptidases. Mol. Cell. Neurosci. 16, 578-596.
19. Horie, M., Mitsumoto, Y., Kyushiki, H., Kanemoto, N., Watanabe, A., et al. (2000) Identification and characterization of TMEFF2, a novel survival factor for hippocampal and mesencephalic neurons. Genomics 67, 146-152.
20. Johnson, K., Patel, S., and Boekelheide, K. (2000) Multiple cadherin superfamily members with unique expression profiles are produced in rat testis. Endocrinology 141, 675-683.
21. Kim, T. R., Yoon, J. H., Kim, Y. C., Yook, Y. H., Kim, I. G., et al. (2004) LPS-induced CD53 expression: a protection mechanism against oxidative and radiation stress. Mol. Cells 17, 125-131.
22. Laird, P. W., Zijderveld, A., Linders, K., Rudnicki, M. A., Jaenisch, R., et al. (1991) Simplified mammalian DNA isolation procedure. Nucleic Acids Res. 19, 4293.
23. Landis, S. C. and Mullen, R. J. (1977) The development and degeneration of Purkinje cells in pcd mutant mice. J. Comp. Neur. 177, 125-144.
24. Lavail, M. M., Blacks, J. C., and Mullen, R. J. (1982) Retinal degeneration in the pcd cerebellar mutant mouse. I. light microscopic and autoradiographic analysis. J. Comp. Neur. 212, 217-230.
25. Mateos, A., Herrero, J., Tamames, J., and Dopazo, J. (2002) Supervised neural networks for clustering conditions in DNA array data after reducing noise by clustering gene expression profiles; in Methods of Microarray Data Analysis II, Lin, S. and Johnson, K. (eds.), pp. 91-103, Kluwer Academic Publishers, Boston.
26. Mullen, R. J., Eicher, E. M., and Sidman, R. L. (1976) Purkinje cell degeneration, a new neurological mutation in the mouse. Proc. Natl. Acad. Sci. USA 73, 208-212.
27. Ricciarelli, R., d'Abramo, C., Massone, S., Pronzato, M., and Tabaton, M. (2004) Microarray analysis in Alzheimer's disease and normal aging. IUBMB Life 56, 349-354.
28. 3J mice. Brain Res. Mol. Brain Res. 132, 128-145.
29. Sarna, J. R. and Hawkes, R. (2003) Patterned Purkinje cell death in the cerebellum. Prog. Neurobiol. 70, 473-503.
30. Sousa, J. C., Grandela, C., Fernandez-Ruiz, J., de Miguel, R., de Sousa, L., et al. (2004) Transthyretin is involved in depression-like behaviour and exploratory activity. J. Neurochem. 88, 1052-1058.
31. Veldic, M., Guidotti, A., Maloku, E., Davis, J., and Costa, E. (2005) In psychosis, cortical interneurons overexpress DNA-methytransfrase 1. Proc. Natl. Acad. Sci. USA 102, 2152-2157.
32. Yoshihara, M. and Montana, E. S. (2004) The synaptotagmins: calcium sensors for vesicular trafficking. Neuroscientist 10, 566-574.