The Synammia enigma: Evidence for a temperate lineage of polygrammoid ferns (Polypodiaceae, Polypodiidae) in southern South America

Systematic Botany

Volumn 31, Issue 1, 2006, Pages 31-41

  Schneider, Harald ^a   Kreier, Hans Peter ^a   Wilson, Rosemary ^a   Smith, Alan R ^b  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FILICOPHYTA; POLYPODIACEAE; POLYPODIIDAE; POLYPODIUM (HYDROZOAN); POLYPODIUM (PLANT); SYNAMMIA;

EID: 33645216527     PISSN: 03636445     EISSN: 03636445     Source Type: Journal    
DOI: 10.1600/036364406775971868     Document Type: Article

References (60)

1. ALFARO, M. E., S. ZOLLER, and F. LUTZONI. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20: 255-266.
2. BRYANT, D. and V. MOULTON. 2004. Neighbor-Net: an agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution 21: 255-265.
3. CHING, R. C. 1978. The Chinese fern families and genera: systematic arrangement and historical origin. Acta Phytotaxonomica Sinica 16(3): 1-19,
4. CHING, R. C. Acta Phytotaxonomica Sinica (4): 16-37.
5. CHRISTENSEN, C. 1905-1906. Index Filicum. Copenghagen: H. Hagerup.
6. COPELAND, E. B. 1947. Genera Filicum. The genera of ferns. Waltham: Chronica Botanica Company.
7. DE LA SOTA, E. R. 1968. Acerca del género "Synammia" Presl. Revista de Museo de La Plata, Seccion botanica 11: 129-132.
8. _, M. M. PONCE, M. A. MORBELLI, and L. CASSA DE PAZOS. 1998. Pteridophyta. Pp. 282-369 in Flora Patagonica Parte I, ed. M. N. Correa. Buenos Aires: Coleccion Cientifica del Inta.
9. DOUADY, C. J., F. DELSUC, Y. BOUCHER, W. F. DOOLITTLE, and E. J. P. DOUZERY. 2003. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Molecular Biology and Evolution 20: 248-254.
10. FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17: 368-376.
11. GIVNISH, T. J. and S. S. RENNER. 2004. Tropical intercontinental disjuncts: Gondwana breakup, immigration from the boreotropics, and transoceanic dispersal. International Journal of Plant Sciences 165,Suppl.: S1-S6.
12. GRAYBEAL, A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Systematic Biology 47: 9-17.
13. HALL, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and anlysis program for Windows 95/98/ NY. Nucleic Acids Symposium Series 41: 95-98.
14. HAUFLER, C. H., W. A. GRAMMER, E. HENNIPMAN, T. A. RANKER, A. R. SMITH, and H. SCHNEIDER. 2003. Systematics of the antfern genus Lecanopteris (Polypodiaceae): testing taxonomic hypotheses with DNA sequences. Systematic Botany 28: 217-228.
15. _, E. A. HOOPER, and J. P. THERRIEN 2000. Modes and mechanisms of speciation in pteridophytes: implications of contrasting patterns in ferns representing temperate and tropical clades. Plant Species Biology 15: 223-236.
16. HENDY, M. D. and D. PENNY. 1989. A framework for the quantitative study of evolutionary trees. Systematic Zoology 38: 297-309.
17. HENNIPMAN, E., P. VELDHOEN, K. U. KRAMER, and M. G. PRICE. 1990. Polypodiaceae. Pp. 203-230 in The families and genera of vascular plants, ed. K. Kubitzki. Berlin: Springer-Verlag.
18. HOVENKAMP, P. H. 1986. A monograph of the fern genus Pyrrosia (Polypodiaceae). Leiden Botanical Series 9: 1-280.
19. HUELSENBECK, J. P. and F. RONQUIST. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
20. HUSON, D. 1998. SplitsTree: a program for analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73.
21. JANSSEN, T. and H. SCHNEIDER. 2005. Exploring the evolution of humus collecting leaves in drynarioid ferns (Polypodiaceae, Polypodiidae). Plant Systematics and Evolution 252: 175-192.
22. JOHNSON, L. A. and D. E. SOLTIS. 1998. Assessing congruence: empirical examples from molecular data. Pp. 297-348 in Molecular systematics of plants II. DNA sequencing, eds. D. E. Soltis, P. S. Soltis, and J. J. Doyle. Boston: Kluwer Academic Publishers.
23. KELCHNER, S. A. 2000. The evolution of non-coding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87: 482-498.
24. KOLACZKOWSKI, B. and J. W. THORNTON. 2004. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogenous. Nature 431: 980-984.
25. KOSAKOVSKY POND, S. L., S. D. W. FROST, and S. V. MUSE. 2005. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
26. KUNKEL, G. 1965. Notes on the genus "Synammia" (Polypodiaceae). Nova Hedwigia 10: 63-66.
27. LANAVE, C., G. PREPARATA, C. SACCONE, and G. SERIO. 1984. A new method for calculating evolutionary substitution rates. Journal of Molecular Evolution 20: 86-93.
28. LEWIS, P. O., M. T. HOLDER, and K. E. HOLSINGER. 2005. Polytomies and Bayesian phylogenetic inference. Systematic Biology 54: 241-253.
29. LOOSER, G. 1951. El género "Polypodium" L. y sus representantes chilenos. Revista Universitaria, Universidad catolica de Chile 36: 13-82.
30. MADDISON, D. R. and W. P. MADDISON. 2000. MacClade 4.05. Sunderland: Sinauer Associates Inc.
31. MARTICORENA, C. and R. RODRÍGUEZ. 1995. Flora de Chile. Vol. 1. Concepción: Universidad de Concepción.
32. MCCULLOCH, R. D., M. J. BENTLEY, R. S. PURVES, N. R. J. HULTON, D. E. SUGDEN, and C. M. CLAPPTERON. 2000. Climatic inference from glacial and palaeoecological evidence at the last glacial termination, southern South America. Journal of Quaternary Science 15: 409-417.
33. MUELLNER, A. N., K. TREMETSBERGER, T. STUESSY, and C. M. BAEZA. 2005. Pleistocene refugia and recolonization routes in the southern Andes: insights from Hypochaeris palustris (Asteraceae, Lactuceae). Molecular Ecology 14: 203-212.
34. MUSE, S. V. and B. S. WEIR. 1992. Testing for equality of evolutionary rates. Genetics 132: 269-276.
35. PENNINGTON, R. T., Q. C. B. CRONK, and J. A. RICHARDSON. 2004. Introduction and synthesis: plant phylogeny and the origin of major biomes. Philosophical Transactions of the Royal Society of London, series B 150: 1455-1464.
36. POE, S. 2003. Evaluation of the strategy of long-branch subdivision to improve accuracy of phylogenetic methods. Systematic Biology 52: 423-428.
37. _ and D. L. SWOFFORD. 1999. Taxon sampling revisited. Nature 398: 300-301.
38. PONCE, M., K. MEHLTRETER, and E. DE LA SOTA. 2002. Análisis biogeográfico de la diversidad pteridofitica en Argentina y Chile continental. Revista Chileana de Historia Natural 75: 703-717.
39. POSADA, D. and K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
40. PREMOLI, A. C., T. KITZGERGER, and T. T. VEBLEN. 2000. Isoenzyme variation and recent biogeographic history of the long-lived conifer Fitzroya cupressoides. Journal of Biogeography 27: 251-260.
41. PREMOLI, A. C., C. P. SOUTO, A. E. ROVERE, T. R. ALLNUT, and A. C. NEWTON. 2002. Patterns of isozyme variation as indicators of biogeographic history in Pilgerodendron uviferum (D.Don) Florín. Diversity and Distributions 8: 57-66.
42. RAMOS, V. 1989. The birth of southern South America. American Scientist 77: 444-450.
43. RANKER, T. A., J. M. O. GEIGER, S. C. KENNEDY, A. R. SMITH, C. H. HAUFLER, and B. S. PARRIS. 2003. Molecular phylogenetics and evolution of the endemic Hawaiian genus Adenophorus (Grammitidaceae). Molecular Phylogenetics and Evolution 26: 337-347.
44. RAVEN, P. H. and D. I. AXELROD. 1974. Angiosperm biogeography and past continental movements. Annals of the Missouri Botanical Garden 61: 39-637.
45. REEB, V., F. LUTZONI, and C. ROUX. 2004. Contribution of rpb2 to multilocus phylogenetic studies of euascomycetes (Pezizomycotina, fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Molecular Phylogenetics and Evolution 32: 1036-1060.
46. RODRÍGUEZ, R. R. 1995. Pteridophyta. Pp. 119-309 in Flora de Chile, Vol. I. Pteridophyta - Gymnospermae, eds. C. Marticorena and R. Rodríguez. Concepción: Universidad de Concepción, Concepción.
47. SCHNEIDER, H., T. JANSSEN, P. HOVENKAMP, A. R. SMITH, R. CRANFILL, C. H. HAUFLER, and T. A. RANKER. 2004a. Phylogenetic relationships of the enigmatic Malesian fern Thylacopteris (Polypodiaceae, Polypodiidae). International Journal of Plant Sciences 165: 1077-1087.
48. _, T. A. RANKER, S. J. RUSSELL, R. CRANFILL, J. M. O. GEIGER, R. AGURAIUJA, K. R. WOOD, M. GRUNDMANN, and J. C. VOGEL. 2005. Origin and diversification of the Hawaiian fern genus Diellia coincides with the renewal of Hawaiian terrestrial life in the Miocene. Proceedings of the Royal Society London, Series B 272: 455-460.
49. _, E. SCHUETTPELZ, K. M. PRYER, R. CRANFILL, S. MAGALLÓN, and R. LUPIA. 2004b. Ferns diversified in the shadow of angiosperms. Nature 428: 553-557.
50. _, A. R. SMITH, R. CRANFILL, C. H. HAUFLER, T. A. RANKER, and T. HILDEBRAND. 2002. Gymnogrammitis dareiformis is a polygrammoid fern (Polypodiaceae) - resolving an apparent conflict between morphological and molecular data. Plant Systematics and Evolution 234: 121-136.
51. _, T. J. HILDEBRAND, C. H. HAUFLER and T. A. RANKER. 2004c. Unraveling the phylogeny of the polygrammoid ferns (Polypodiaceae and Grammitidaceae): exploring aspects of the diversification of epiphytic plants. Molecular Phylogenetics and Evolution 31: 1041-1063.
52. 39AR and K-Ar chronology of Pleistocene glaciations in Patagonia. Geological Society of America Bulletin 116: 434-450.
53. SPENCER, M., E. SUSKO, and A. J. ROGER. 2005. Likelihood, parsimony, and heterogeneous evolution. Molecular Biology and Evolution 22: 1161-1164.
54. SUDGEN, D. E., N. R. J. HULTON, and R. S. PURVES. 2002. Modeling the conception of the Patagonian ice sheet. Quarternary International 95-96: 55-64.
55. SWOFFORD, D. L. 2000. PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4. Sunderland: Sinauer Associates Inc.
56. TREWICK, S. A., M. MORGAN-RICHARDS, S. J. RUSSELL, S. HENDERSON, F. J. RUMSEY, I. PINTER, J. A. BARRETT, M. GIBBY, and J. C. VOGEL. 2002. Polyploidy, phylogeography and Pleistocene refugia of the rockfern Asplenium ceterach: evidence from chloroplast DNA. Molecular Ecology 11: 2003-2012.
57. TRYON, R. M. and A. F. TRYON. 1982. Ferns and allied plants with special reference to tropical America. New York: Springer-Verlag.
58. VAN UFFELEN, G. A. 1991. Fossil Polypodiaceae and their spores. Blumea 36: 253-272.
59. VOGEL, J. C., F. J. RUMSEY, J. J. SCHNELLER, J. A. BARRETT, and M. GIBBY. 1999. Where are the glacial refugia in Europe? Evidence from pteridophytes. Biological Journal of the Linnean Society 66: 23-37.
60. WOLF, P. G., H. SCHNEIDER, and T. A. RANKER. 2001. Geographic distributions of homosporous ferns: does dispersal obscure evidence of vicariance. Journal of Biogeography 28: 263-270.