Strict rules determine arrangements of strands in sandwich proteins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 11, 2006, Pages 4107-4110

  Kister, A E ^a   Fokas, A S ^b   Papatheodorou, T S ^c   Gelfand, I M ^d  

^a UNIVERSITY OF MEDICINE AND DENTISTRY OF NEW JERSEY   (United States)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c UNIVERSITY OF PATRAS   (Greece)

^d RUTGERS UNIVERSITY   (United States)

Author keywords

Protein secondary structure; Structure prediction; Supersecondary structure

Indexed keywords

HYDROGEN; PROTEIN; SANDWICH PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BETA SHEET; COMPUTER ANALYSIS; GEOMETRY; HYDROGEN BOND; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; STRANDON;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BIOPHYSICS; HYDROGEN BONDING; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PLASTOCYANIN; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 33645214000     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0510747103     Document Type: Article

References (22)

1. Ptitsyn, O. B. & Finkelstein, A. V. (1980) Q. Rev. Biophys. 13, 339-386.
2. Kikuchi, T., Nemethy, G. & Scheraga, H. A. (1988) J. Protein Chem. 7, 473-490.
3. Lesk, A. M., Branden, C. J. & Chothia, C. (1989) Proteins Struct. Funct. Genet. 5, 139-148.
4. Wodak, S. J. (1996) Nat. Struct. Biol. 3, 575-578.
5. Chelvanayagam, G., Knecht, L., Jenny, T., Benner, S. A. & Gonnet, G. H. (1998) Fold Design 3, 149-160.
6. Weslhead, D. R., Slidel, T. W. F., Flores, T. P. J. & Thornton, J. M. (1999) Protein Sci. 8, 897-904.
7. Aim, E. & Baker, D. (1999) Curr. Opin. Struct. Biol. 9, 189-196.
8. Zhang, C. & Kim, S.-H. (2000) J. Mol. Biol. 299, 1075-1089.
9. Michalopoulos, G. M., Torrance, D. R., Gilbert, D. R. & Westhead, D. R. (2004) Nucleic Acids Res. 32, D251-D254.
10. Andreeva, A., Howorth, D., Brenner, S. E., Hubbard, T. J. P., Chothia, C. & Murzin, A. G. (2004) Nucleic Acids Res. 32, D226-D229.
11. Pearl, F., Todd, A., Sillitoe, I., Dibley, M., Redfern, O., Lewis, T., Bennett, C., Marsden, R., Grant, A., Lee, D., et al. (2005) Nucleic Acids Res. 33, D247-D251.
12. Richardson, J. S. (1976) Proc. Natl. Acad. Sci. USA 73, 2619-2623.
13. Efimov, A. V. (1982) Mol. Biol. (Mosk.) 16, 799-806.
14. Chothia, C. (1984) Annu. Rev. Biochem. 53, 537-572.
15. Zhang, C. & Kim, S.-H. (2000) Proteins 40, 409-419.
16. Ruczinski, I., Kooperberg, C., Bonneau, R. & Baker, D. (2002) Proteins 48, 85-97.
17. Kisler, A. E., Finkelslein, A. V. & Gelfand, I. M. (2002) Proc. Natl. Acad. Sci. USA 99, 14137-14141.
18. Fokas, A. S., Gelfand, I. M. & Kister, A. E. (2004) Proc. Natl. Acad. Sci. USA 101, 16780-16783.
19. Fokas, A. S., Papatheodorou, T. S, Kister, A. E. & Gelfand, I. M. (2005) Proc. Natl. Acad. Sci. USA 102, 15851-15853.
20. Laskowski, R. A. (2001) Nucleic Acids Res. 29, 221-222.
21. Chothia, C. & Finkelstein, A. (1990) Annu. Rev. Biochem. 59, 1007-1039.
22. Wilson, C. J. & Wittung-Statshede, P. (2005) Proc. Natl. Acad. Sci. USA 102, 3984-3987.