An evaluation of hybrid methods for matching biomedical terminologies: Mapping the gene ontology to the UMLS®

Studies in Health Technology and Informatics

Volumn 95, Issue , 2003, Pages 62-67

  Cantor, M N ^a   Sarkar, I N ^a   Gelman, R ^a   Hartel, F ^b   Bodenreider, O ^c   Lussier, Y A ^a  

^a Och Spine at New York Presbyterian Hospitals   (United States)

^b NATIONAL CANCER INSTITUTE   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

Bioinformatics; Gene Ontology; Mapping Terminologies; Medical Informatics; Unified Medical Language System

Indexed keywords

BIOINFORMATICS; GENES; MEDICINE; TERMINOLOGY;

BIOLOGICAL SCIENCE; BIOMEDICAL VOCABULARIES; GENE ONTOLOGY; INFORMATION EXCHANGES; MAPPING TECHNIQUES; MEDICAL INFORMATICS; PRECISION AND RECALL; UNIFIED MEDICAL LANGUAGE SYSTEMS;

MAPPING;

EID: 33645193063     PISSN: 09269630     EISSN: 18798365     Source Type: Book Series    
DOI: 10.3233/978-1-60750-939-4-62     Document Type: Conference Paper

References (11)

1. Altaian RB, Klein TE. Challenges for biomedical informatics and pharmacogenomics. Annual Review of Pharmacology &Toxicology 2002;42:113-133.
2. Shortliffe E, (eds). PL. Medical Informatics: Computer Applications in Health Care and Biomedicine. New York: Springer; 2001.
3. Yu H, Friedman C, Rhzetsky A, Kra P. Representing genomic knowledge in the UMLS semantic network. Proc Am Med Inf Assoc 1999:181-186.
4. National Library of Medicine. UMLS Lexical Tools. Available at http://umlsks.nlm.nih.gov
5. Tuttle MS, Suarez-Munist ON, Olsen NE, et al. Merging terminologies. MEDINFO 1995;8(partl)(l):162-166.
6. Zeng Q, Cimino JJ. Mapping medical vocabularies to the UMLS. Proc Am Med Inf Assoc1996:730-4.
7. Bodenreider O, Mitchell JA, McCray AT. Evaluation of the UMLS as a terminology and knowledge resource for biomedical informatics. Proc Am Med Inf Assoc 2002:61-65.
8. Sperzel WD, Abarbanel RM, Nelson SJ, et al. Biomedical database interconnectivity: An experiment linking MIM, GENBANK, and META-1 via MEDLINE. Proc Annu Symp Comput Appl Med Care 1991:190-193.
9. Sarkar IN, Cantor MN, Gelman R, Hartel F, Lussier YA. Linking biomedical information and knowledge resources: GO and UMLS. Proc Pac Symp Biocomputing 2003.
10. Gene Ontology Consortium. Creating the Gene Ontology Resource: Design and Implementation. Gen Res. 2001; 11(8): 1425-1433.
11. Aronson AR. Effective mapping of biomedical text to the UMLS. Proc Am Med Inf Assoc 2001:17-21.