Correlation between translation efficiency and outcome of combination therapy in chronic hepatitis C genotype 3

Journal of Viral Hepatitis

Volumn 13, Issue 2, 2006, Pages 87-95

  Yasmeen, A ^a,c   Hamid, S ^b   Granath, F N ^a   Lindstrom H ^a   Elliott, R M ^d   Siddiqui, A A ^c   Persson, M A A ^a  

^a KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

^b AGA KHAN UNIVERSITY HOSPITAL   (Pakistan)

^c AGA KHAN UNIVERSITY   (Pakistan)

^d UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

IRES region; Luciferase; Prognostic test; Treatment response

Indexed keywords

ALPHA INTERFERON; LUCIFERASE; RIBAVIRIN;

ADULT; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; DRUG TREATMENT FAILURE; GENOTYPE; HEPATITIS C; HEPATITIS C VIRUS; HEPATITIS C VIRUS 3; HUMAN; IN VITRO STUDY; INTERNAL RIBOSOME ENTRY SITE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROGNOSIS; SEQUENCE ANALYSIS; TREATMENT RESPONSE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; VIRUS TRANSCRIPTION;

ADULT; ANIMALS; ANTIVIRAL AGENTS; BASE SEQUENCE; CELL LINE; DOWN-REGULATION; DRUG THERAPY, COMBINATION; HEPACIVIRUS; HEPATITIS C, CHRONIC; HUMANS; INTERFERON-ALPHA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROTEIN BIOSYNTHESIS; RIBAVIRIN; RNA, VIRAL; SPECIES SPECIFICITY; TREATMENT OUTCOME; VIRAL PROTEINS;

EID: 33645108752     PISSN: 13520504     EISSN: 13652893     Source Type: Journal    
DOI: 10.1111/j.1365-2893.2005.00660.x     Document Type: Article

References (26)

1. Murphy FA Fauquet CM Bishop DHL et al. eds Classification and Nomenclature of Viruses: Sixth Report of the International Committee on Taxonomy of Viruses New York Springer-Verlag 1995
2. Chamberlain RW Adams N Saeed AA Simmonds P Elliott RM Complete nucleotide sequence of a type 4 hepatitis C virus variant, the predominant genotype in the Middle East J Gen Virol 1997 78 1341 1347
3. Kobayashi M Tanaka E Sodeyama T Urushihara A Matsumoto A Kiyosawa K The natural course of chronic hepatitis C: a comparison between patients with genotype 1 and 2 hepatitis C Hepatology 1996 23 695 699
4. Izopet J Payen JL Alric L et al Baseline level and early suppression of serum HCV RNA for predicting sustained complete response to alpha-interferon therapy J Med Virol 1998 54 86 91
5. Buratti E Gerotto P Pontisso P Alberti A Tisminetzky SG Baralle FE In vivo translation efficiency of different hepatitis C virus 5′-UTRs FEBS Lett 1997 411 275 280
6. Jackson RJ Kaminski A Internal initiation of translation in eukaryotes: the picornavirus paradigm and beyond RNA 1995 1 985 1000
7. Wang TH Rijnbrand RC Lemon SM Core protein-coding sequence, but not core protein, modulates the efficiency of cap-independent translation directed by the internal ribosome entry site of hepatitis C virus J Virol 2000 74 11347 11358
8. Wang C Le SY Ali N Siddiqui A An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 59 noncoding region RNA 1995 1 526 537
9. Honda M Beard MR Ping LH Lemon SM A phylogenetically conserved stem-loop structure at the 5′-border of the internal ribosome entry site of hepatitis C virus is required for cap-independent viral translation J Virol 1999 73 1165 1174
10. Buratti E Tisminetzky S Zotti M Baralle FE Functional analysis of interaction between HCV 5-UTR and putative subunits of eukaryotic translation initiation factor eIF3 Nucleic Acids 1998 26 3179 3187
11. Kaminski A Hunt SL Patton JG Jackson RJ Direct evidence that polypyrimidine tract binding protein (PTB) is essential for internal initiation of translation of encehalomyocarditis virus RNA RNA 1995 1 924 938
12. Yamamoto C Enomoto N Kurosaki M et al Nucleotide sequence variations in the internal ribosome entry site of hepatitis C virus-1b: no association with efficacy of interferon therapy or serum HCV-RNA levels Hepatology 1997 26 1616 1620
13. Honda M Kaneko S Matsushita E Kobayashi K Abell GA Lemon SM Cell cycle regulation of hepatitis C virus internal ribosomal entry site-directed translation Gastroenterology 2000 118 152 162
14. Laporte J Malet I Andrieu T et al Comparative analysis of translation efficiencies of hepatitis C virus 5′ untranslated regions among intra-individual quasispecies present in chronic infection: opposite behaviors depending on cell type J Virol 2000 74 10827 10833
15. Lerat H Shimizu YK Lemon SM Cell type-specific enhancement of hepatitis C virus internal ribosome entry site-directed translation due to 5′ nontranslated region substitutions selected during passage of virus in lymphoblastoid cells J Virol 2000 74 7024 7031
16. Laporte J Bain C Maurel P Inchauspe G Agut H Cahour A Differential distribution and internal translation efficiency of hepatitis C virus quasispecies present in dendritic and liver cells Blood 2003 101 52 57
17. Hoofnagle JH Therapy of acute and chronic viral hepatitis Adv Intern Med 1994 39 241 275
18. Lai MY Kao JH Yang PM et al Long-term efficacy of ribavirin plus interferon alfa in the treatment of chronic hepatitis C Gastroenterology 1996 111 1307 1312
19. Liang TJ Rehermann B Seeff LB Hoofnagle JH Pathogenesis, natural history, treatment and prevention of hepatitis C Ann Intern Med 2000 132 296 305
20. Collier AJ Tang S Elliot RM Translation efficiencies of the 5-untranslated region from representatives of the 6 major genotypes of hepatitis C virus using a novel bicistronic reporter assay system J Gen Virol 1998 79 2359 2366
21. Sáiz JC López de Quinto S Ibarrola N et al Internal initiation of translation efficiency in different hepatitis C genotypes isolated from interferon treated patients Arch Virol 1999 144 215 229
22. Moatter T Hussainy AS Hamid S Ahmad Z Siddiqui S Comparative analysis of viral titers and histologic features of Pakistani patients infected with hepatitis C virus type 3 Int J Infect Dis 2002 6 272 276
23. Mumtaz K Hamid S Moatter T Abid S Jaffery W Distribution of genotypes in Pakistan and response to combination therapy Pakistan Society of Gastroenterology Meeting 2005 p. S61
24. Davidson F Simmonds P Ferguson JC et al Survey of major genotypes and subtypes of hepatitis C virus using RFLP of sequences amplified from the 5′ non-coding region J Gen Virol 1995 76 1197 1204
25. Luo G Xin S Cai Z Role of the 5′-proximal stem-loop structure of the 5′ untranslated region in replication and translation of hepatitis C virus RNA J Virol 2003 77 3312 3318
26. Kato J Kato N Moriyayam M et al Interferons specifically suppress the translation from the internal ribosome entry site of hepatitis C virus through a double stranded RNA activated protein kinase independent pathway J Infect Dis 2002 186 155 163