RAPD analysis of genetic diversity among and within Portuguese landraces of common white bean (Phaseolus vulgaris L.)

Scientia Horticulturae

Volumn 108, Issue 2, 2006, Pages 133-142

  Martins, S R ^a   Vences, F J ^b   Saenz De Miera L E ^b   Barroso, M R ^c   Carnide, V ^a  

^a UNIVERSITY OF TRÁS OS MONTES AND ALTO DOURO   (Portugal)

^b UNIVERSITY OF LEÓN   (Spain)

^c Ministero da Agricultura do Desenvolvimento Rural e das Pescas Portugal   (Portugal)

Author keywords

Gametic disequilibrium; Genetic varibility; Phaseolus vulgaris; RAPD

Indexed keywords

GENETIC VARIATION;

PHASEOLUS (ANGIOSPERM); PHASEOLUS VULGARIS;

EID: 33644989299     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2006.01.031     Document Type: Article

References (52)

1. M.T. Alvarez, L.E. Sáenz de Miera, and M. Pérez de la Vega Genetic variation in common and runner bean of the Northern Mesete in Spain Genet. Res. Crop Evol. 45 1998 243 251
2. L. Becerra-Velasquez, and P. Gepts RFLP diversity of common bean (Phaseolus vulgaris) in its centers of origin Genome 37 1994 256 263
3. S. Beebe, P.W. Skroch, J. Tohme, M.C. Duque, F. Pedraza, and J. Nienhuis Structure of genetic diversity among common bean landraces of Middle American origin based on correspondence analysis of RAPD Crop Sci. 40 2000 264 273
4. S. Beebe, J. Rengifo, E. Gaitan, M.C. Duque, and J. Tohme Diversity and origin of Andean landraces of common bean Crop Sci. 41 2001 854 862
5. L. Briand, A.E. Brown, J.M. Lenné, and D.M. Teverson Random amplified polymorphic DNA variation within and among bean landrace mixtures (Phaseolus vulgaris L.) from Tanzania Euphytica 102 1998 371 377
6. J.W.S. Brown, J.R. McFerson, F.A. Bliss, and T.C. Hall Genetic divergence among commercial classes of Phaseolus vulgaris in relation to phaseolin pattern HortScience 17 1982 752 754
7. M. Caixeta, S. Túlio, V. Rodrigues, and S. Mui Caracterização da diversidade genética em feijão por meio de marcadores RAPD Pesq. Agropec. Bras. Brasília 36 2001 381 385
8. C.D. Chase, V.M. Ortega, and C.E. Vallejos DNA restriction fragment length polymorphisms correlate with isozyme diversity in Phaseolus vulgaris L. Theor. Appl. Genet. 81 1991 806 811
9. O. Danylchenko, and B. Sorochinsky Use of RAPD assay for the detection of mutation changes in plant DNA induced by UV-B and γ-rays BMC Plant Biol. 5 Suppl. 1 2005 S9
10. D.G. Debouck, O. Toro, O.M. Paredes, W.C. Johnson, and P. Gepts Genetic diversity and ecological distribution of Phaseolus vulgaris (Fabaceae) in north-western South America Econ. Bot. 47 1993 408 423
11. A.M. De Ron, M. Santalla, N. Barcala, A.P. Rodiño, P.A. Casquero, and M.C. Menéndez Phaseolus spp. at the Misión Biológica de Galicia, Spain Plant Genet. Res. News 112 1997 100
12. FAO, 2004. Food and Agriculture Organization of the United Nations. Faostat agriculture data. http://www.fao.org.
13. J.J. Ferreira, E. Alvarez, M.A. Fueyo, A. Roca, and R. Giraldez Determination of the outcrossing rate of Phaseolus vulgaris L. using seed protein markers Euphytica 113 2000 259 263
14. S.A. Flint-Garcia, J.M. Thornsberry, and E.S. Buckler Structure of linkage disequilibrium in plants Annu. Rev. Plant Biol. 54 2003 357 374
15. O.H. Frankel Natural variation and its conservation A. Muhammed R. Aksel R.C. von Borstel Genetic Diversity in Plants 1977 Plenum Press New York 21 44
16. M.Z. Galván, M.B. Aulicino, S. García Medina, and P.A. Balatti Genetic diversity among Northwestern Argentinian cultivars of common bean (Phaseolus vulgaris L.) as revealed by RAPD markers Gen. Res. Crop Evol. 48 2001 251 260
17. E.H. García, C.B. Peña-Valdivia, J.R.R. Aguirre, and J.S.M. Muruaga Morphological and agronomic traits of a wild population and an improved cultivar of common bean (Phaseolus vulgaris L.) Ann. Bot. 79 1997 207 213
18. P. Gepts The use of molecular and biochemical markers in crop evolution studies M.K. Hecht Evolutionary Biology 1993 Plenum Press New York 51 94
19. P. Gepts, and F.A. Bliss Dissemination pathways of common bean (Phaseolus vulgaris Fabaceae) deduced from phaseolin electrophoretic variability. II. Europe and Africa Econ. Bot. 42 1988 86 104
20. P. Gepts, T.C. Osborn, K. Rashka, and F.A. Bliss Phaseolin-protein variability in wild forms and landraces of the common bean (Phaseolus vulgaris). Evidence for multiple centers of domestication Econ. Bot. 40 1986 451 468
21. J. Gil, and A.M. Ron Variation in Phaseolus vulgaris in the Northwest of the Iberian Peninsula Plant Breed. 109 1992 313 319
22. P.W. Hedrick Hitchhiking: a comparison of linkage and partial selfing Genetics 94 1980 791 808
23. P.W. Hedrick Genetics of Populations 1983 Jones and Bartlett Publishers Inc. Boston
24. F.J. Ibarra-Perez, B. Ehdaie, and J.G. Waines Estimation of outcrossing rate in common bean Crop Sci. 37 1997 60 65
25. S.W. Lee, F.T. Ledig, and D.R. Johnson Genetic variation at allozyme and Rapd markers in Pinus longaeva (Pinaceae) of the White Mountains, California Am. J. Bot. 89 2002 566 577
26. G. Limongelli, G. Laghetti, P. Perrino, and A.R. Piergiovanni Variation of seed storage protein in landraces of common bean (Phaseolus vulgaris L.) from Basilicata, Southern Italy Euphytica 92 1996 393 399
27. M. Lynch, and B.G. Milligan The analysis of populations genetic structure with RAPD markers Mol. Ecol. 3 1994 91 99
28. F.L. Maciel, L.T.S. Gerald, and S. Echeverrigaray Random amplified polymorphic DNA (RAPD) markers variability among cultivars and landraces of common beans (Phaseolus vulgaris L.) of south-Brazil Euphytica 120 2001 257 263
29. N. Mantel The detection of disease clustering and a generalized regression approach Cancer Res. 27 1967 209 220
30. P. Masi, P.C. Zeuli, and P. Donini Development and analysis of multiplex microsatellite markers sets in common bean (Phaseolus vulgaris L.) Mol. Breed. 11 2003 303 313
31. I. Métais, C. Aubruy, B. Hamon, D. Pelties, and R. Jalouzot Cloning, quantification and characterization of a minisatellite DNA sequences from common bean (Phaseolus vulgaris L.) Theor. Appl. Genet. 97 1998 232 237
32. I. Métais, C. Aubruy, B. Hamon, and R. Jalouzot Description and analysis of genetic diversity between commercial bean lines (Phaseolus vulgaris L.) Theor. Appl. Genet. 101 2000 1207 1214
33. I. Métais, B. Hamon, R. Jalouzot, and D. Peltier Structure and level of genetic diversity in various bean types evidenced with microsatellite markers isolated from a genomic enriched library Theor. Appl. Genet. 104 2002 1346 1352
34. M. Nei Analysis of gene diversity in subdivided populations Proc. Natl. Acad. Sci. U.S.A. 70 1973 3321 3323
35. M. Nei, and S. Kumar Molecular Evolution and Phylogenetics 2000 Oxford University Press Oxford, New York
36. J. Nowosielski, W. Podyma, and D. Nowosielska Molecular research on the Genetic diversity of Polish varieties and landrace of Phaseolus coccineus L. and (Phaseolus vulgaris L.) using the RAPD and AFLP methods Cell. Mol. Biol. Lett. 7 2002 753 762
37. R. Papa, and P. Gepts Asymmetry of gene flow and differential geographical structure of molecular diversity in wild and domesticated common bean (Phaseolus vulgaris L.) from Mesoamerica Theor. Appl. Genet. 106 2003 239 250
38. S. Park, T. Michaels, J. Myers, D. Hunt, and K. Stewart-William Outcrossing rates of common bean grown in Ontario and Idaho Ann. Rep. Bean Improve Coop. 39 1996 90 91
39. J.A. Rafalski Novel genetic mapping tools in plants: SNPs and LD-based approaches Plant Sci. 162 2002 329 333
40. A.P. Rodiño, M. Santalla, I. Montero, P.A. Casquero, and A.M. de Ron Diversity of common bean (Phaseolus vulgaris L.) germplasm from Portugal Genet. Res. Crop Evol. 48 2001 409 417
41. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
42. M. Santalla, A.P. Rodiño, and A.M. de Ron Allozyme evidence supporting southwestern Europe as a secondary center of genetic diversity for the common bean Theor. Appl. Genet. 104 2002 934 944
43. S.P. Singh Broadening the genetic base of common bean cultivars: a review Crop Sci. 41 2001 1659 1675
44. Singh, S.P., Gepts, P., Debouck, D.G., 1991. Races of common bean (Phaseolus vulgaris Fabaceae).
45. P.W. Skroch, J. Nienhuis, S. Beebe, J. Tohme, and F. Pedraza Comparison of Mexican common bean (Phaseolus vulgaris L.) core and reserve germplasm collections Crop Sci. 38 1998 488 496
46. T. Stockton, and P. Gepts Identification of DNA probes that reveal polymorphisms among closely related Phaseolus vulgaris lines Euphytica 76 1994 177 183
47. O. Toro, J. Tohme, J. Vargas, and D.G. Debouck Wild Bean (Phaseolus vulgaris L.): Description and Distribution 1990 Centro International de Agricultura Tropical Colombia, CA
48. E.M. Vargas, G. Macaya, J.P. Baudoin, and O.J. Rocha Case studies on breeding systems and its consequences for germplasm conservation. 3. Electrophoretic mobility of phaseolins in wild populations of Lima beans (Phaseolus lunatus L.) in the Central Valley of Costa Rica Genet. Res. Crop Evol. 48 2001 109 120
49. R. Vitalis, and D. Couvet Two-locus identity probabilities and identity disequilibrium in a partially selfing subdivided population Genet. Res. Camb. 77 2001 67 81
50. J.K. Wu, V. Krutovskii, and S.H. Strauss Nuclear DNA diversity, population differentiation, and phylogenetic relationships in the California closed-cone pines based on RAPD and allozyme markers Genome 42 1999 893 908
51. K. Yu, S.J. Park, and V. Poysa Abundance and variation of microsatellite DNA sequences in bean (Phaseolus and Vigna) Genome 42 1999 27 34
52. D. Zizumbo, P. Colunga, E. Payró, Delgado, and P. Gepts Population structure and evolutionary dynamics of wild-weedy-domesticated complexes of common bean in a Mesoamerican Region Crop Sci. 45 2005 1073 1083