Wood-inhabiting fungal communities in woody debris of Norway spruce (Picea abies(L.)Karst.), as reflected by sporocarps, mycelial isolations and T-RFLP identification

FEMS Microbiology Ecology

Volumn 55, Issue 1, 2006, Pages 57-67

  Allmér, Johan ^a   Vasiliauskas, Rimvis ^a   Ihrmark, Katarina ^a   Stenlid, Jan ^a   Dahlberg, Anders ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Diversity; Mycelial cultures; Slash; Sporocarps; Stumps; T RFLP; Wood inhabiting fungi

Indexed keywords

FUNGAL DNA; RIBOSOME DNA;

BIODIVERSITY; FOREST ECOSYSTEM; FUNGUS; INHIBITION;

ANALYTIC METHOD; ARTICLE; COMMUNITY ECOLOGY; CONTROLLED STUDY; DNA SEQUENCE; FUNGAL COLONIZATION; FUNGUS; FUNGUS CULTURE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; INTERMETHOD COMPARISON; MYCELIUM; NONHUMAN; NORWAY SPRUCE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; SPOROCARP; WOOD;

ASCOMYCOTA; BASIDIOMYCOTA; COLONY COUNT, MICROBIAL; DNA, FUNGAL; ECOSYSTEM; ENVIRONMENTAL MICROBIOLOGY; FUNGI; MITOSPORIC FUNGI; MYCELIUM; MYCOLOGICAL TYPING TECHNIQUES; NORWAY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SPECIES SPECIFICITY; WOOD; ZYGOMYCOTA;

FUNGI; PICEA ABIES;

EID: 33644953048     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2005.00010.x     Document Type: Article

References (49)

1. Adair S Seong HS Breuil C 2002 A molecular approach for early monitoring of decay basidiomycetes in wood chips FEMS Micobiol Lett 211 117 122
2. Allen TR Millar T Berch M Berbee ML 2003 Culturing and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots New Phytol 160 255 272
3. Anonymous 2002 Energy in Sweden 2002 Swedish National Energy Administration Eskilstuna
4. Bader P Jansson S Jonsson BG 1995 Wood-inhabiting fungi and substratum decline in selectively logged boreal spruce forests Biol Conserv 72 355 362
5. Bendiksen E Hoiland K Jordal JB Brandrud TE 1998 Truede og sårbare sopparter i Norge, en kommentert rodliste Fungiflora Oslo, Norway
6. Dahlberg A Stokland J 2004 Vedlevande arters krav på substrat, en sammanställning och analys av 3 600 arter. Skogsstyrelsen. Rapport 7. [In Swedish].
7. Dickie IA Bing X Koide RT 2002 Vertical niche differentiation of ectomycorrhizal hyphae in soil as shown by T-RFLP analysis New Phytol 156 527 535
8. Edel-Hermann V Dreumont C Pérez-Piqueres A Steinberg C 2004 Terminal restriction fragment length polymorphism analysis of ribosomal RNA genes to assess changes in fungal community structure in soils FEMS Microbiol Ecol 47 397 404
9. Erland S Taylor AFS 1999 Resupinate ectomycorrhizal fungal genera Ectomycorrhizal Fungi: Key Genera in Profile Cairney JWG Chambers SM eds), pp. 347 358 Springer Berlin, Germany
10. Fridman J Walheim M 2000 Amount, structure, and dynamics of dead wood on managed forestland in Sweden For Ecol Manage 131 23 36
11. Gärdenfors U (ed) 2000 The 2000 Red-List of Swedish Species ArtDatabanken, Swedish University of Agricultural Sciences Sweden
12. Gardes M Bruns TD 1993 ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts Mol Ecol 2 113 118
13. Gardes M Bruns TD 1996 Community structure of ectomycorrizal fungi in a Pinus muricala forest above- and below-ground views Can J Bot 74 1572 1583
14. Gustafsson M 2002 Distribution and Dispersal of Wood-decaying Fungi Occurring on Norway Spruce Logs. PhD Thesis, Swedish University of Agricultural Sciences, Uppsala, Sweden.
15. Hansen L Knudsen H (eds.) 1997 Nordic Macromycetes Vol. 3. Heterobasidioid, Aphyllophoroid, and Gasteromycetoid Basidiomycetes Nordsvamp Copenhagen, Denmark
16. Holmer L Stenlid J 1996 Diffuse competition among wood decay fungi Oecologia 106 531 538
17. Husch B Miller CI Beers TW 1982 Forest Mensuration John Wiley & Sons New York, USA
18. Högberg N Land CJ 2004 Identification of Serpulalacrymans and other decay fungi in construction timber by sequencing of ribosomal DNA - A practical approach Holzforschung 58 199 204
19. Jasalavich CA Ostrofsky A Jellison J 2000 Detection and identification of decay fungi in spruce wood by restriction fragment length polymorphism analysis of amplified genes encoding rDNA Appl Environ Microbiol 66 4725 4734
20. Johannesson H Stenlid J 1999 Molecular identification of wood-inhabiting fungi in unmanaged Picea abies forest in Sweden For Ecol Manage 115 203 211
21. Käärik AA Rennerfelt E 1957 Investigations on the fungal flora of spruce and pine stumps Medd Statliga Skogsforskningsinst 47 1 88
22. Korhonen K Stenlid J 1998 Biology of Heterobasidion annosum Heterobasidion annosum. Biology, Ecology, Impact and Control Woodward S Stenlid J Karjalainen R Hüttermann A eds), pp. 43 70 CAB International Wallingford, UK
23. Kruys N Fries C Jonsson BG Lämås T Ståhl G 1999 Wood-inhabiting cryptogams on dead Norway spruce (Picea abies) trees in managed Swedish boreal forests Can J For Res 29 178 186
24. Kruys N Jonsson BG 1999 Fine woody debris is important for species richness on logs in managed boreal spruce forests of northern Sweden Can J For Res 29 1295 1299
25. Landeweert R Leeflang P Kuyper TW Hoffland E Rosling A Wernars K Smit E 2003 Molecular identification of ectomycorrhizal mycelium in soil horizons Appl Environ Microbiol 69 327 333
26. Lindahl BD Olsson S 2004 Fungal translocation - creating and responding to environmental heterogeneity Mycologist 18 79 88
27. Lindblad I 1997 Wood-inhabiting fungi on fallen logs of Norway spruce relations to forest management and substrate quality Nord J Bot 18 243 255
28. Liu W-T Marsh TL Cheng H Forney LJ 1997 Characterization of microbial diversity by determining Terminal Restriction Fragment Length Polymorphisms of genes encoding 16S rRNA Appl Environ Microbiol 63 4516 4522
29. Lord NS Kaplan CW Shank P Kitts CL Elrod SL 2002 Assessment of fungal diversity using terminal restriction fragment (T-RFLP) pattern analysis comparison of 18S and ITS ribosomal regions FEMS Microbiol Ecol 42 327 337
30. Menkis A Allmer J Vasiliauskas R Lygis V Stenlid J Finlay R 2004 Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris Mycol Res 108 965 973
31. Niemelä T Korhonen K 1998 Taxonomy of the Genus Heterobasidion Heterobasidion annosum. Biology, Ecology, Impact and Control Woodward S Stenlid J Karjalainen R Hüttermann A eds), pp. 167 193 CAB International Wallingford, UK
32. Norden B Ryberg M Götmark F Olausson B 2004 Relative importance of coarse and fine woody debris for the diversity of wood-inhabiting fungi in temperate broadleaf forests Biol Conserv 117 1 10
33. Pentillä R Siitonen J Kuusinen M 2004 Polypore diversity in managed and old-growth boreal Picea abies forests in southern Finland Biol Conserv 117 271 83
34. Rassi P Alanen A Kanerva T Mannerkoski I 2001 The 2000 Red List of Finnish species Ministry of Environment, Finnish Environment Institute Helsinki, Finland
35. Rayner ADM Boddy L 1988 Fungal Decomposition of Wood: Its Biology and Ecology John Wiley & Sons Chichester, UK
36. Renvall P 1995 Community structure and dynamics of wood rotting Basidiomycetes on decomposing conifer trunks in northern Finland Karstenia 35 1 51
37. Siitonen J 2001 Forest management, coarse woody debris and saproxylic organisms Fennoscandian boreal forests as an example Ecology of Woody Debris in Boreal Forests Ecological Bulletin Vol. 49 Jonsson B-G Kruys N eds), pp. 11 42 Munksgaard International Publisher, Copenhagen, Denmark
38. Sippola AL Renvall P 1999 Wood-decomposing fungi and seed-tree cutting a 40-year perspective For Ecol Manage 115 183 201
39. Sippola AL Simila M Monkkonen M Jokimaki J 2001 Diversity of polyporous fungi (Polyporaceae) in northern boreal forests effects of forest site type and logging intensity Scand J For Res 19 152 163
40. Speight MCD 1989 Saproxylic Invertebrates and their Conservation Council of Europe Strasbourg, France
41. Stalpers JA 1978 Identification of wood-inhabiting Aphyllophorales in pure culture Studies in Mycology 16 CBS, Baarn, the Netherlands
42. Stenlid J 1985 Population structure of Heterobasidion annosum as determined by somatic incompatibility, sexual incompatibility and isoenzyme patterns Can J For Res 63 2268 2273
43. Taylor A 2002 Fungal diversity in ectomycorrhizal communities sampling effort and species detection Plant Soil 244 19 28
44. Tedersoo L Köljalg U Hallenberg N Larsson K-H 2003 Fine scale distribution of ectomycorrhizal fungi and roots across substrate layers including coarse woody debris in mixed forest New Phytol 159 153 165
45. Thor M Stenlid J 2005 Heterobasidion annosum infection of Picea abies following manual or mechanized stump treatment Scand J For Res 20 154 164
46. Vandenkoornhuyse P Ridgway KP Watson IJ Fitter AH Young JPW 2003 Co-existing grass species have distinctive arbuscular mycorrhizal communities Mol Ecol 12 3085 3095
47. Vasiliauskas R Stenlid J 1998 Fungi inhabiting stems of Picea abies in a managed stand in Lithuania For Ecol Manage 109 119 126
48. Vasiliauskas R Larsson E Larsson K-H Stenlid J 2005 Persistence and long-term impact of Rotstop biological control agent on mycodiversity in Picea abies stumps Biol Control 32 295 304
49. White TJ Bruns T Lee S Taylor JW 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics PCR Protocols: A Guide to Methods and Applications Innis MA Gelfand DH Sninsky JJ White TJ eds), pp. 315 322 Academic Press New York, USA