The atu and liu clusters are involved in the catabolic pathways for acyclic monoterpenes and leucine in Pseudomonas aeruginosa

Applied and Environmental Microbiology

Volumn 72, Issue 3, 2006, Pages 2070-2079

  Aguilar, J A ^a   Zavala, A N ^a   Diaz Perez C ^a   Cervantes, C ^a   Diaz Perez A L ^a   Campos Garcia J ^a  

^a UNIVERSIDAD MICHOACANA DE SAN NICOLÁS DE HIDALGO   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MATERIALS; DEGRADATION; ENZYMES; GENES; METABOLITES; MUTAGENESIS;

ACYCLIC ISOPRENOID DEGRADATION; ACYCLIC MONOTERPENES OF THE CITRONELLOL FAMILY (AMTC); LIU (LEUCINE AND ISOVALERATE UTILIZATION); MUTANTS; TRANSCRIPTIONAL FUSION;

METABOLISM;

3 METHYLCROTONOYL COENZYME A; BETA GALACTOSIDASE; BIOTIN; CARBOXYLASE; CITRONELLOL; COENZYME A; GERANIOL; GERANYL COENZYME A; HYDROXYMETHYLGLUTARYL COENZYME A LYASE; ISOPRENOID; ISOVALERIC ACID; LEUCINE; LYASE; TERPENE DERIVATIVE; UNCLASSIFIED DRUG;

BACTERIUM;

ALPHAPROTEOBACTERIA; AMINO ACID SEQUENCE; ARTICLE; ATU GENE; CATABOLISM; CONTROLLED STUDY; ENZYME ACTIVITY; GENE CLUSTER; GENE EXPRESSION; LIU GENE; METABOLITE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PHYLOGENY; PSEUDOMONAS AERUGINOSA;

BACTERIAL PROTEINS; CARBON-CARBON LIGASES; EVOLUTION, MOLECULAR; LEUCINE; MONOTERPENES; MULTIGENE FAMILY; MUTATION; PENTANOIC ACIDS; PHYLOGENY; PSEUDOMONAS AERUGINOSA; SEQUENCE ANALYSIS, DNA;

ALPHAPROTEOBACTERIA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

EID: 33644937420     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.72.3.2070-2079.2006     Document Type: Article

References (34)

1. Anderson, M. D., P. Che, J. Song, B. J. Nikolau, and E. S. Wurtele. 1998. 3-Methylcrotonyl-coenzyme A carboxylase is a component of the mitochondrial leucine catabolic pathway in plants. Plant Physiol. 118:1127-1138.
2. Campos-García, J., and G. Soberón-Chávez. 2000. Degradation of the methyl substituted alkene, citronellol, by Pseudomonas aeruginosa, wild type and mutant strains. Biotechnol. Lett. 22:235-237.
3. Cantwell, S. G., E. P. Lau, D. S. Watt, and R. R. Fall. 1978. Biodegradation of acyclic isoprenoids by Pseudomonas species. J. Bacteriol. 153:324-333.
4. Conrad, R. S., L. K. Massey, and J. R. Sokatch. 1974. D- and L-isoleucine metabolism and regulation of their pathways in Pseudomonas putida. J. Bacteriol. 11:103-111.
5. Díaz-Pérez, A. L., N. A. Zavala-Hernández, C. Cervantes, and J. Campos-García. 2004. The atuRDBHAL cluster is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. Appl. Environ. Microbiol. 70:5102-5110.
6. Fall, R. R., J. L. Brown, and T. L. Schaeffer. 1979. Enzyme recruitment allows the biodegradation of recalcitrant branched hydrocarbons by Pseudomonas citronellolis. Appl. Environ. Microbiol. 38:715-722.
7. Fall, R. R., and M. L. Hector. 1977. Acyl-coenzyme A carboxylases. Homologous 3-methylcrotonyl-CoA and geranyl-CoA carboxylases from Pseudomonas citronellolis. Biochemistry 16:4000-4005.
8. Figurski, D. H., and D. R. Helinski. 1979. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. USA 76:1648-1652.
9. Guan, X., T. Diez, T. K. Prasad, B. J. Nikolau, and E. S. Wurtele. 1999. Geranoyl-CoA carboxylase: a novel biotin-containing enzyme in plants. Arch. Biochem. Biophys. 362:12-21.
10. Hector, M. L., and R. R. Fall. 1976. Multiple acyl-coenzyme A carboxylases in Pseudomonas citronellolis. Biochemistry 15:3465-3472.
11. Higgins, D. G., and P. M. Sharp. 1988. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244.
12. Hoschle, B., V. Gnau, and D. Jendrossek. 2005. Methylcrotonyl-CoA and geranyl-CoA carboxylases are involved in leucine/isovalerate utilization (Liu) and acyclic terpene utilization (Atu), and are encoded by liuB/liuD and atuC/atuF, in Pseudomonas aeruginosa. Microbiology 151:3649-3656.
13. Jacobs, M. A., A. Alwood, I. Thaipisuttikul, D. Spencer, E. Haugen, S. Ernst, O. Will, R. Kaul, C. Raymond, R. Levy, L. Chun-Rong, D. Guenthner, D. Bovee, M. V. Olson, and C. Manoil. 2003. Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 100:14339-14344.
14. Kimura, Y., R. Miyake, Y. Tokumasu, and M. Sato. 2000. Molecular cloning and characterization of two genes for the biotin carboxylase and carboxyl-transferase subunits of acetyl coenzyme A carboxylase in Myxococcus xanthus. J. Bacteriol. 182:5462-5469.
15. Kondo, H., K. Shiratsuchi, T. Yoshimoto, T. Masuda, A. Kitazono, D. Tsuru, M. Anai, M. Sekiguchi, and T. Tanabe. 1991. Acetyl-CoA carboxylase from Escherichia coli: gene organization and nucleotide sequence of the biotin carboxylase subunit. Proc. Natl. Acad. Sci. USA 88:9730-9733.
16. Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
17. Marshall, V. P., and J. R. Sokatch. 1968. Oxidation of D-amino acids by particulate enzyme from Pseudomonas aeruginosa. J. Bacteriol. 95:1419-1424.
18. Martin, R. R., V. D. Marshall, J. R. Sokatch, and L. Unger. 1973. Common enzymes of branched-chain amino acid catabolism in Pseudomonas putida. J. Bacteriol. 115:198-204.
19. Massey, L. K., R. S. Conrad, and J. R. Sokatch. 1974. Regulation of leucine catabolism in Pseudomonas putida. J. Bacteriol. 118:112-120.
20. McKean, A. L., J. Ke, J. Song, P. Che, S. Achenbach, B. J. Nikolau, and E. S. Wurtele. 2000. Molecular characterization of the non-biotin-containing subunit of 3-methylcrotonyl-CoA carboxylase. J. Biol. Chem. 275:5582-5590.
21. Page, R. D. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
22. Poston, J. M. 1976. Leucine 2,3-aminomutase, an enzyme of leucine catabolism. J. Biol. Chem. 251:1859-1863.
23. Preston, M. J., P. C. Seed, D. S. Toder, B. H. Iglewski, D. E. Ohman, J. K. Gustin, J. B. Goldberg, and G. B. Pier. 1997. Contribution of proteases and LasR to the virulence of Pseudomonas aeruginosa during corneal infections. Infect. Immun. 65:3086-3090.
24. Robert, E. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
25. Rodriguez, E., and H. Gramajo. 1999. Genetic and biochemical characterization of the alpha and beta components of a propionyl-CoA carboxylase complex of Streptomyces coelicolor A3(2). Microbiology 145:3109-3119.
26. Rodríguez, J. M., P. Ruíz-Salas, M. Ugarte, and M. A, Peñalva. 2004. Fungal metabolic model for 3-methylcrotonyl-CoA carboxylase deficiency. J. Biol. Chem. 279:4578-4587.
27. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
28. Schaeffer, T. L., S. G. Cantwell, J. L. Brown, D. S. Watt, and R. R. Fall. 1979. Microbial growth on hydrocarbons: terminal branching inhibits biodegradation. Appl. Environ. Microbiol. 38:742-746.
29. Song, J., E. S. Wurtele, and B. J. Nikolau. 1994. Molecular cloning and characterization of the cDNA coding for the biotin-containing subunit of 3-methylcrotonyl-CoA carboxylase: identification of the biotin carboxylase and biotin-carrier domains. Proc. Natl. Acad. Sci. USA 91:5779-5783.
30. Stover, K. C., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. L. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K.-S. Wong, Z. Wu, I. Paulsen, J. Reizer, M. H. Saier, R. E. W. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1: an opportunistic pathogen. Nature 406:959-964.
31. Van Der Meer, J. R., W. M. De Vos, S. Harayama, and A. J. B. Zehnder. 1992. Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiol. Rev. 56:677-694.
32. West, S. E. H., H. P. Schweizer, C. Dall, A. K. Sample, and L. J. Runyen-Janecky. 1994. Construction of improved Escherichia coli-Pseudomonas shuttle vectors derived from pUC18/19 and sequence of the region required for their replication in Pseudomonas aeruginosa. Gene 128:81-86.
33. Wong, S. M., and J. J. Mekalanos. 2000. Genetic footprinting with mariner-based transposition in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 97:10191-10196.
34. Yeh, W. K., and L. N. Ornston. 1980. Origins of metabolic diversity: substitution of homologous sequences into genes for enzyme with different catalytic activities. Proc. Natl. Acad. Sci. USA 77:5365-5369.