Early detection of breast cancer based on gene-expression patterns in peripheral blood cells

Breast Cancer Research

Volumn 7, Issue 5, 2005, Pages

  Sharma, Praveen ^a   Sahni, Narinder S ^a   Tibshirani, Robert ^b   Skaane, Per ^c   Urdal, Petter ^c   Berghagen, Hege ^a   Jensen, Marianne ^a   Kristiansen, Lena ^a   Moen, Cecilie ^a   Sharma, Pradeep ^a   Zaka, Alia ^a   Arnes, Jarle ^d   Sauer, Torill ^c   Akslen, Lars A ^d   Schlichting, Ellen ^c   Børresen Dale, Anne Lise ^e,f   Lönneborg, Anders ^a  

^a DiaGenic ASA   (Norway)

^b STANFORD LAW SCHOOL   (United States)

^c ULLEVÅL UNIVERSITY HOSPITAL   (Norway)

^d HAUKELAND UNIVERSITY HOSPITAL   (Norway)

^e OSLO UNIVERSITY HOSPITAL   (Norway)

^f UNIVERSITY OF OSLO   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; BLOOD CELL; BREAST CANCER; BREAST CARCINOMA; CANCER PATIENT; CLINICAL ARTICLE; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; EARLY DIAGNOSIS; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; HUMAN; MAMMOGRAPHY; MIDDLE AGED; PILOT STUDY; PREDICTION; RIBOSOME; TRANSLATION REGULATION; VERY ELDERLY; ANALYSIS OF VARIANCE; BLOOD; BREAST TUMOR; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENETICS; LABORATORY DIAGNOSIS; NUCLEIC ACID HYBRIDIZATION; PATHOLOGY; REFERENCE VALUE; REPRODUCIBILITY;

COMPLEMENTARY DNA; DNA;

ANALYSIS OF VARIANCE; BLOOD CELLS; BREAST NEOPLASMS; DNA, COMPLEMENTARY; DNA, NEOPLASM; FALSE NEGATIVE REACTIONS; FALSE POSITIVE REACTIONS; FEMALE; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REFERENCE VALUES; REPRODUCIBILITY OF RESULTS;

EID: 33644878428     PISSN: 14655411     EISSN: 1465542X     Source Type: Journal    
DOI: 10.1186/bcr1203     Document Type: Article

References (19)

1. Kolb TM, Lichy J, Newhouse JH: Comparison of the performance of screening mammography, physical examination, and breast US and evaluation of factors that influence them: an analysis of 27,825 patient evaluations. Radiology. 2002, 225: 165-175.
2. Bertucci F, Nasser V, Granjeaud S, Eisinger F, Adelaide J, Tagett R, Loriod B, Giaconia A, Benziane A, Devilard E, et al: Gene expression profiles of poor-prognosis primary breast cancer correlate with survival. Hum Mol Genet. 2002, 11: 863-872. 10.1093/hmg/11.8.863.
3. Ellis M, Davis N, Coop A, Liu M, Schumaker L, Lee RY, Srikanchana R, Russell CG, Singh B, Miller WR, et al: Development and validation of a method for using breast core needle biopsies for gene expression microarray analyses. Clin Cancer Res. 2002, 8: 1155-1166.
4. Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, et al: Molecular portraits of human breast tumours. Nature. 2000, 406: 747-752. 10.1038/35021093.
5. Sørlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, et al: Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci USA. 2001, 98: 10869-10874. 10.1073/pnas.191367098.
6. Sørlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, et al: Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci USA. 2003, 100: 8418-8423. 10.1073/pnas.0932692100.
7. van 't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT, et al: Gene expression profiling predicts clinical outcome of breast cancer. Nature. 2002, 415: 530-536. 10.1038/415530a.
8. West M, Blanchette C, Dressman H, Huang E, Ishida S, Spang R, Zuzan H, Olson JA, Marks JR, Nevins JR: Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci USA. 2001, 98: 11462-11467. 10.1073/pnas.201162998.
9. Whitney AR, Diehn M, Popper SJ, Alizadeh AA, Boldrick JC, Relman DA, Brown PO: Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci USA. 2003, 100: 1896-1901. 10.1073/pnas.252784499.
10. Tibshirani R, Hastie T, Narasimhan B, Chu G: Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci USA. 2002, 99: 6567-6572. 10.1073/pnas.082099299.
11. Hastie T, Tibshirani R, Friedman J: The Elements of Statistical Learning. 2001, New York: Springer
12. Ambroise C, McLachlan GJ: Selection bias in gene extraction on the basis of microarray gene-expression data. Proc Natl Acad Sci USA. 2002, 99: 6562-6566. 10.1073/pnas.102102699.
13. Ceci M, Gaviraghi C, Gorrini C, Sala LA, Offenhauser N, Marchisio PC, Biffo S: Release of elF6 (p27-BBP) from the 60S subunit allows 80S ribosome assembly. Nature. 2003, 426: 579-584. 10.1038/nature02160.
14. Ahmad K, Henikoff S: Histone H3 variants specify modes of chromatin assembly. Proc Natl Acad Sci USA. 2002, 99: 16477-16484. 10.1073/pnas.172403699.
15. Orino K, Lehman L, Tsuji Y, Ayaki H, Torti SV, Torti FM: Ferritin and the response to oxidative stress. Biochem J. 2001, 357: 241-247. 10.1042/0264-6021:3570241.
16. Nisapakultorn K, Ross KF, Herzberg MC: Calprotectin expression inhibits bacterial binding to mucosal epithelial cells. Infect Immun. 2001, 69: 3692-3696. 10.1128/IAI.69.6.3692-3696.2001.
17. Nicodemus CF, Avraham S, Austen KF, Purdy S, Jablonski J, Stevens RL: Characterization of the human gene that encodes the peptide core of secretory granule proteoglycans in promyelocytic leukemia HL-60 cells and analysis of translated product. J Biol Chem. 1990, 265: 5889-5896.
18. Zhang X, Kluger Y, Nakayama Y, Poddar R, Whitney C, DeTora A, Weismann SM, Newburger PE: Gene expression in mature neutrophils: early responses to inflammatory stimuli. J Leukoc Biol. 2004, 75: 358-372. 10.1189/jlb.0903412.
19. Subrahmanyam YV, Yamga S, Prashar Y, Lee HH, Hoe NT, Kluger Y, Gerstein M, Goguen JD, Newburger PE, Weismann SM: RNA expression patterns change dramatically in human neutrophils exposed to bacteria. Blood. 2001, 97: 2457-2468. 10.1182/blood.V97.8.2457.