Microbial community structure in polluted Baltic Sea sediments

Environmental Microbiology

Volumn 8, Issue 2, 2006, Pages 223-232

  Edlund, Anna ^a,b   Soule, Terence ^c   Sjöling, Sara ^a   Jansson, Janet K ^b  

^a SÖDERTÖRN UNIVERSITY   (Sweden)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^c University of Idaho   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS);

BACTERIAL DNA; SEA WATER;

ARTICLE; BACTERIUM; CHEMISTRY; ENVIRONMENTAL MONITORING; EUTROPHICATION; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEDIMENT; SWEDEN; WATER POLLUTANT;

BACTERIA; DNA, BACTERIAL; ENVIRONMENTAL MONITORING; EUTROPHICATION; GEOLOGIC SEDIMENTS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEAWATER; SWEDEN; WATER MICROBIOLOGY; WATER POLLUTANTS, CHEMICAL;

EID: 33644870711     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2005.00887.x     Document Type: Article

References (36)

1. Altschul SF. Madden TL. Schaeffer AA. Zhang J. Zhang Z. Miller W. Lipman DJ. 1997 Gapped blast and psi - blast : a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. Amann R. 1995 Fluorescently labeled ribosomal RNA-targeted oligonucleotide probes in the study of microbial ecology Mol Ecol 4 543 553
3. Blomqvist S. Abrahamsson B. 1985 An improved Kajak-type gravity core sampler for soft sediments Schweis Z Hydrol 47 81 84
4. Blomqvist S. Larsson U. Borg H. 1992 Heavy-metal decrease in the sediments of a Baltic bay following tertiary sewage treatment Mar Pollut Bull 24 258 266
5. Bowman JP. Rea SM. McCammon SA. McMeekin TA. 2000 Diversity and community structure within anoxic sediment from marine salinity meromictic lakes and a coastal meromictic marine basin, Vestfold Hills, Eastern Antarctica Environ Microbiol 2 227 237
6. Cole JR. Chai B. Farris RJ. Wang Q. Kulam SA. McGarrell DM. et al. 2003 The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy Nucleic Acids Res 31 442 443
7. Dahlberg K. Jansson BO. 1997 The Environmental Status of the Baltic Sea in the 40s, Now and in the Future Stockholm Marine Research Centre. Technical Report No. 24. ISSN 1104-8298.
8. DeLong EF. 1992 Archaea in coastal marine environments Proc Natl Acad Sci USA 89 5685 5689
9. DeLong EF. 2003 Oceans of Archaea ASM News 69 503 511
10. Dominik K. Höfle MG. 2002 Changes in bacterioplankton community structure and activity in a eutrophied lake as revealed by 5S rRNA analysis Appl Environ Microbiol 68 3606 3613
11. Eilers H. Pernthaler J. Glöckner FO. Amann R. 2000 Culturability and in situ abundance of pelagic bacteria from the North Sea Appl Environ Microbiol 66 3044 3051
12. Elmgren R. 1989 Man's impact on the ecosystem of the Baltic Sea: energy flows today and the turn of the century Ambio 18 326 332
13. Elmgren R. Larsson U. 1997 Himmerfjärden: förändringar i ett näringsbelastat kustekosystem i Östersjön. Naturvårdsverket report 4565, p. 197. Stockholm, Sweden Naturvårdsverket Förlag (Summary in English).
14. Forney L. 2003 ) The Microbial Community Analysis Website ( mica ), at (Department of Biological Sciences, University of Idaho, USA).
15. Geiß U. Selig U. Schumann R. Steinbruch R. Bastrop R. Hagemann M. Schoor A. 2004 Investigations on cyanobacterial diversity in a shallow estuary (Southern Baltic Sea) including genes relevant to salinity resistance and iron starvation acclimation Environ Microbiol 6 377 387
16. Giovannoni S. Rappé M. 2000 Evolution and diversity of marine prokaryotes. In Microbial Ecology of the Oceans Kirchman DL. (ed.). New York, USA Wiley-Liss, pp. 47 84
17. Hagström Å. Pinhassi J. Zweifel UL. 2000 Biogeographical diversity among marine bacterioplankton Aquat Microbiol Ecol 21 231 244
18. Hansson S. Rudstam LG. 1990 Eutrophication and Baltic fish communities Ambio 19 123 125
19. Hentschel U. Hopke J. Horn M. Friedrich AB. Wagner M. Hacker J. Moore BS. 2002 Molecular evidence for a uniform microbial community in sponges from different oceans Appl Environ Microbiol 68 4431 4440
20. Höfle MG. Brettar I. 1995 Taxonomic diversity and metabolic activity of microbial communities in the water column of the central Baltic Sea Limnol Oceanogr 40 868 874
21. Köster M. Dahlke S. Meyer-Reil LA. 1997 Microbiological studies along a gradient of eutrophication in a shallow coastal inlet in the southern Baltic Sea (Nordrugensche Bodden) Mar Ecol Prog Series 152 27 39
22. Langheder S. Kisand V. Wikner J. Tranvik LJ. 2003 Salinity as a structuring factor for the composition and performance of bacterioplankton degrading riverine DOC FEMS Microbiol Ecol 45 189 202
23. Larsson U. Elmgren R. Wulff F. 1985 Eutrophication and the Baltic Sea - causes and consequences Ambio 14 9 14
24. Legendre P. Legendre L. 1998 Canonical analysis. In Numerical Ecology 2nd edn Legendre P. Legendre L. (eds) Amsterdam, the Netherlands Elsevier Science BV, pp. 575 633
25. Leppäkoski E. Mihnea PE. 1999 Enclosed seas under man-induced change: a comparison between the Baltic and the Black Sea Biodiv Conserv 8 55 70
26. Liu WT. Marsh TL. Cheng H. Forney LJ. 1997 Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA Appl Environ Microbiol 63 4516 4522
27. Müller-Schneider T. 1994 The visualization of structural change by means of correspondence analysis. In Correspondence Analysis in the Social Sciences Greenacre M. Blasius J. (eds) London, UK Academic Press, pp. 267 279
28. Murray AE. Preston CM. Massana R. Taylor LT. Blakis A. DeLong EF. 1998 Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica Appl Environ Microbiol 64 2585 2595
29. Muyzer G. Teske A. Wirsen CO. Jannasch HW. 1995 Phylogenetic relationship of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments Arch Microbiol 164 162 172
30. Osborn AM. Moore ERB. Timmis KM. 2000 An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics Environ Microbiol 2 39 50
31. Pinhassi J. Zweifel UL. Hagström Å. 1997 Dominant marine bacterioplankton species found among colony forming Bacteria Appl Environ Microbiol 63 3359 3366
32. Sjöling S. Cowan DA. 2003 High 16S rDNA bacterial diversity in glacial meltwater lake sediment, Bratina island, Antarctica Extremophiles 7 275 282
33. Tett P. Gilpin L. Svendsen H. Erlandsson CP. Larsson U. Kratzer S. et al. 2003 Eutrophication and some European waters of restricted exchange Continental Shelf Res 23 1635 1671
34. Thioulouse J. Chessel D. Dolédec S. Olivier JM. 1997 ADE-4: a multivariate analysis and graphical display software Stat Comput 7 75 83
35. Torsvik V. Øvreås L. Thingstad TF. 2002 Prokaryotic diversity-magnitude, dynamics, and controlling factors Science 296 1064 1065
36. Weisburg WG. Barns SM. Pelletier DA. Lane DJ. 1991 16S Ribosomal DNA amplification for phylogenetic study J Bacteriol 173 697 703