Molecular localization of a ribosome-dependent ATPase on Escherichia coli ribosomes

Nucleic Acids Research

Volumn 34, Issue 4, 2006, Pages 1158-1165

  Xu, J ^d   Kiel, M C ^a   Golshani, A ^b   Chosay, J G ^c   Aoki, H ^d   Ganoza, M C ^d  

^a MARYWOOD UNIVERSITY   (United States)

^b CARLETON UNIVERSITY   (Canada)

^c PFIZER INC   (United States)

^d UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ADENOSINE TRIPHOSPHATASE; MESSENGER RNA; NUCLEOTIDE; PROTEIN RBBA; TRANSFER RNA; UNCLASSIFIED DRUG; ADENOSINE TRIPHOSPHATE; ESCHERICHIA COLI PROTEIN; RBBA PROTEIN, E COLI;

ARTICLE; BINDING SITE; CONTROLLED STUDY; DATA ANALYSIS; ENZYME ASSAY; ENZYME ISOLATION; ENZYME LOCALIZATION; ENZYME PURIFICATION; ENZYME STABILITY; ENZYME SYNTHESIS; ESCHERICHIA COLI; ISOTOPE LABELING; MOLECULAR BIOLOGY; MOLECULAR MECHANICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; RIBOSOME; RNA TRANSLATION; CHEMISTRY; ENZYMOLOGY; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; PROTEIN SYNTHESIS;

ESCHERICHIA COLI;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; BINDING SITES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; PROTEIN BIOSYNTHESIS; RIBOSOMES; RNA, TRANSFER;

EID: 33644850774     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkj508     Document Type: Article

References (29)

1. Yonath,A. and Bashan,A. (2004) Ribosomal crystallography: Initiation, peptide bond formation, and amino acid polymerization are hampered by antibiotics. Annu. Rev. Microbiol., 58, 233-251.
2. Wilson,D.N. and Nierhaus,K.H. (2003) The ribosome through the looking glass. Angew. Chem. Int. Ed. Engl., 42, 3464-3486.
3. Liljas,A. (2004) Ribosomal sites and ribosomal states. The catalysts-translation factors. The process-translation (Chapters 8, 9, 11). Structural Aspects of Protein Synthesis. World Scientific Publishing Company, New Jersey, London, Singapore, Beijing, Shangai, Hong-Kong, Taipei, and Chennai, pp. 75-98, 99-158, 175-207.
4. Phe, EF-Tu and a GTP analog. Science, 270, 1464-1472.
5. Rodnina,M.V., Savelsbergh,A., Katunin,V.I. and Wintermeyer,W. (1997) Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome. Nature, 385, 37-41.
6. Wilson,K.S. and Noller,H.F. (1998) Molecular movement inside the translational engine. Cell, 92, 337-349.
7. Andersen,C.F., Anand,M., Boesen,T., Bich Van,L., Kinzy,T.G. and Andersen,G.R. (2004) Purification and crystallization of the yeast translation elongation factor EF-3. Acta. Crys., D60, 1304-1307.
8. Triana-Alonso,F.J., Chakraburtty,K. and Nierhaus,K.H. (1995) The elongation factor 3 unique in higher fungi and essential for protein biosynthesis is an E site factor. J. Biol. Chem., 270, 20473-20478.
9. Ganoza,M.C., Cunningham,C. and Green,R.M. (1995) A new factor from Escherichia coli affects translocation of mRNA. J. Biol. Chem., 270, 26377-26381.
10. Kiel,M.C., Aoki,H. and Ganoza,M.C. (1999) Identification of a ribosomal ATPase in Escherichia coli cells. Biochimie., 81, 1097-1108.
11. Kiel,M.C. and Ganoza,M.C. (2001) Functional interactions of an Escherichia coli ribosomal ATPase. Eur. J. Biochem., 268, 278-286.
12. Chakraburtty,K. and Triana-Alonso,F.J. (1998) Yeast elongation factor 3: structure and function. Biol. Chem., 379, 831-840.
13. Green,R.H., Glick,B.R. and Ganoza,M.C. (1985) Requirements for in vitro reconstruction of protein synthesis. Biochem. Biophys. Res. Commun., 126, 792-798.
14. Nishizuka,Y. and Lipmann,F. (1966) Comparison of guanosine triphosphate split and polypeptide synthesis with a purified E.coli system. Proc. Natl Acad. Sci. USA, 55, 212-219.
15. Xu,J., Golshani,A., Aoki,H., Remme,J., Chosay,J., Shinabarger,D.L. and Ganoza,M.C. (2005) Protected nucleotide G2608 in 23S rRNA confers resistance to oxazolidinones in E.coli. Biochem. Biophys. Res. Commun., 328, 471-476.
16. Sanger,F., Nicklen,S. and Coulson,A.R. (1997) DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA, 74, 5463-5467.
17. Ganoza,M.C., Aoki,H., Burkhardt,N. and Murphy,B.J. (1996) The ribosome as affinity matrix: Efficient purification scheme for translation factors. Biochimie., 78, 51-61.
18. Burkhardt,N., Junemann,R., Spahn,C.H. and Nierhaus,K.H. (1998) Ribosomal tRNA binding sites: Three site model of translation. Crit. Rev. Biochem. Mol. Biol., 33, 95-149.
19. Ganoza,M.C. and Kiel,M.C. (2001) A ribosomal ATPase is a target for hygromycin B inhibition on Escherichia coli ribosomes. Antimicrob. Agents and Chemo., 45, 2813-2819.
20. Yusupov,M.M., Yusupova,G.Z., Baucom,A., Lieberman,K., Earnest,T.N., Cate,J.H. and Noller,H.F. (2001) Crystal structure of the ribosome at 5.5 A resolution. Science, 292, 883-896.
21. Davidson,A.L. and Chen,J. (2004) ATP-binding cassette transporters in bacteria. Annu. Rev. Biochem., 73, 241-268.
22. Czworkowski,J. and Moore,P.B. (1996) The elongation phase of protein synthesis. Prog. Nucleic Acid. Res. Mol. Biol., 54, 293-332.
23. Blanchard,S.C., Gonzalez,R.L. Jr, Kim,H.D., Chu,S. and Puglisi,J.D. (2004) tRNA selection and kinetic proofreading in translation. Nature Struct. Mol. Biol., 11, 1008-1014.
24. Sergiev,P.V., Lavirk,I.N., Wlassoff,V.A., Dokudovskaya,S.S., Dontsova,O.A., Bogdanov,A.A. and Brimacombe,R. (1997) The path of the mRNA through the bacterial ribosome: A site-directed crosslinking study using new photoreactive derivatives of guanosine and uridine. RNA, 3, 464-475.
25. Shatsky,I.N., Bakin,A.V., Bogdanov,A.A. and Vasiliev,V.D. (1991) How does mRNA pass through the ribosome? Biochemie., 73, 937-945.
26. Gulnara,Z., Yusupova,H., Yusopova,M.M., Cate,J.M.D. and Noller,H.F. (2001) The path of messenger RNA through the ribosome. Cell, 106, 233-241.
27. Triana,F., Nierhaus,K.H., Ziehler,J. and Chakraburtty,K. (1993) Defining the function of EF-3, a unique elongation factor in low fungi. In Nierhaus,K.H., Franceschi,F., Subramanian,A., Erdmann,V. and Wittmann-Liebold,B. (eds), The Translation Apparatus. Plenum Publishing Corp., NY, pp. 327-338.
28. Ganoza,M.C., Kiel,M.C. and Aoki,H. (2002) Evolutionary conservation of reactions in translation. Microbiol. Mol. Biol. Rev., 66, 460-485.
29. Schawirth,B.S., Bovinskaya,M.A., Hau,C.W., Zhang,W., Vila-Sanjurjo,A., Holton,J.M. and Cate,J.H. (2005) Structure of the bacterial ribosome at the 3.5 A resolution. Science, 310, 827-834.