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Volumn 42, Issue 4, 2006, Pages 362-365

Phylogenetic study on a bacterial community in the floodwater of a Japanese paddy field estimated by sequencing 16S rDNA fragments after denaturing gradient gel electrophoresis

Author keywords

Bacterial community; Denaturing gradient gel electrophoresis; Floodwater; Paddy field; Phylogeny

Indexed keywords

MICROBIAL COMMUNITY; PADDY FIELD; PHYLOGENETICS;

EID: 33644844818     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-005-0041-x     Document Type: Article
Times cited : (11)

References (16)
  • 1
    • 0141725843 scopus 로고    scopus 로고
    • Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats
    • Bowman JP, Nichols CM, Gibson JAE (2003) Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53:1343-1355
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1343-1355
    • Bowman, J.P.1    Nichols, C.M.2    Gibson, J.A.E.3
  • 2
    • 0013862339 scopus 로고
    • Morphological and physiological characteristics of Spirillum gracile sp. n.
    • Canale-Parola E, Rosenthal SL, Kupfer DG (1966) Morphological and physiological characteristics of Spirillum gracile sp. n. Antonie van Leeuwenhoek 32:113-124
    • (1966) Antonie Van Leeuwenhoek , vol.32 , pp. 113-124
    • Canale-Parola, E.1    Rosenthal, S.L.2    Kupfer, D.G.3
  • 3
    • 0033976024 scopus 로고    scopus 로고
    • Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov
    • Evtushenko LI, Dorofeeva LV, Subbotin SA, Cole JR, Tiedje JM (2000) Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov. Int J Syst Evol Microbiol 50:371-380
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 371-380
    • Evtushenko, L.I.1    Dorofeeva, L.V.2    Subbotin, S.A.3    Cole, J.R.4    Tiedje, J.M.5
  • 4
    • 0001387728 scopus 로고
    • The genera Flavobacterium, Sphingobacterium, and Weeksella
    • Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) Springer, Berlin Heidelberg New York
    • Holmes B (1992) The genera Flavobacterium, Sphingobacterium, and Weeksella. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes: a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, 2nd edn, vol 4. Springer, Berlin Heidelberg New York, pp 3620-3630
    • (1992) The Prokaryotes: A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd Edn , vol.4 , pp. 3620-3630
    • Holmes, B.1
  • 5
    • 0042239256 scopus 로고    scopus 로고
    • Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses
    • Ikenaga M, Asakawa S, Muraoka Y, Kimura M (2003) Bacterial communities associated with nodal roots of rice plants along with the growth stages: estimation by PCR-DGGE and sequence analyses. Soil Sci Plant Nutr 49:591-602
    • (2003) Soil Sci Plant Nutr , vol.49 , pp. 591-602
    • Ikenaga, M.1    Asakawa, S.2    Muraoka, Y.3    Kimura, M.4
  • 6
    • 0036944004 scopus 로고    scopus 로고
    • Community structure of the microbiota in the floodwater of a Japanese paddy field estimated by restriction fragment length polymorphism and denaturing gradient gel electrophoresis pattern analyses
    • Kimura M, Shibagaki T, Nakajima Y, Matsuya K, Ikenaga M (2002) Community structure of the microbiota in the floodwater of a Japanese paddy field estimated by restriction fragment length polymorphism and denaturing gradient gel electrophoresis pattern analyses. Biol Fertil Soils 36:306-312
    • (2002) Biol Fertil Soils , vol.36 , pp. 306-312
    • Kimura, M.1    Shibagaki, T.2    Nakajima, Y.3    Matsuya, K.4    Ikenaga, M.5
  • 7
    • 0001589301 scopus 로고
    • The bacterial flora of distilled and stored water. III. New species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas
    • Leifson E (1962) The bacterial flora of distilled and stored water. III. New species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas. Int Bull Bacteriol Nomencl Taxon 12:161-170
    • (1962) Int Bull Bacteriol Nomencl Taxon , vol.12 , pp. 161-170
    • Leifson, E.1
  • 9
    • 2942648437 scopus 로고    scopus 로고
    • Phylogeny of the ring-forming bacterium Arcicella aquatica gen. nov., sp. nov. (ex Nikitin et al. 1994), from a freshwater neuston biofilm
    • Nikitin DI, Strömpl C, Oranskaya MS, Abraham W-R (2004) Phylogeny of the ring-forming bacterium Arcicella aquatica gen. nov., sp. nov. (ex Nikitin et al. 1994), from a freshwater neuston biofilm. Int J Syst Evol Microbiol 54:681-684
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 681-684
    • Nikitin, D.I.1    Strömpl, C.2    Oranskaya, M.S.3    Abraham, W.-R.4
  • 10
    • 0034069573 scopus 로고    scopus 로고
    • Seasonal variations of phospholipid fatty acid composition in the floodwater of a Japanese paddy field under a long-term fertilizer trial
    • Okabe A, Toyota K, Kimura M (2000) Seasonal variations of phospholipid fatty acid composition in the floodwater of a Japanese paddy field under a long-term fertilizer trial. Soil Sci Plant Nutr 46:177-188
    • (2000) Soil Sci Plant Nutr , vol.46 , pp. 177-188
    • Okabe, A.1    Toyota, K.2    Kimura, M.3
  • 12
    • 0019371499 scopus 로고
    • Chitinophaga, a new genus of chitinolytic myxobacteria
    • Sangkhobol V, Skerman VBD (1981) Chitinophaga, a new genus of chitinolytic myxobacteria. Int J Syst Bacteriol 31:285-293
    • (1981) Int J Syst Bacteriol , vol.31 , pp. 285-293
    • Sangkhobol, V.1    Skerman, V.B.D.2
  • 14
    • 0842280549 scopus 로고    scopus 로고
    • 2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov.
    • 2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov. Int J Syst Evol Microbiol 54:99-106
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 99-106
    • Spring, S.1    Jöckel, U.2    Wagner, M.3    Kämpfer, P.4
  • 15
    • 1342289956 scopus 로고    scopus 로고
    • Actinobacteial 16S rRNA genes from freshwater habitats cluster in four distinct lineages
    • Warnecke F, Amann R, Pernthaler J (2004) Actinobacteial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ Microbiol 6:242-253
    • (2004) Environ Microbiol , vol.6 , pp. 242-253
    • Warnecke, F.1    Amann, R.2    Pernthaler, J.3
  • 16
    • 0032932359 scopus 로고    scopus 로고
    • Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov.
    • Wen A, Fegan M, Hayward C, Chakraborty S, Sly LI (1999) Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov. Int J Syst Bacteriol 49:567-576
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 567-576
    • Wen, A.1    Fegan, M.2    Hayward, C.3    Chakraborty, S.4    Sly, L.I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.