Emergence of species-specific transporters during evolution of the hemiascomycete phylum

Genetics

Volumn 172, Issue 2, 2006, Pages 771-781

  De Hertogh, Benoît ^a,b   Hancy, Frédéric ^a   Goffeau, André ^a   Baret, Philippe V ^a  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^b UNIVERSITY OF NAMUR   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

ARTICLE; CANDIDA GLABRATA; CLASSIFICATION; CONTROLLED STUDY; DEBARYOMYCES HANSENII; GENE SEQUENCE; GENETIC IDENTIFICATION; GENOME; KLUYVEROMYCES; MEMBRANE TRANSPORT; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PHYLUM; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; YARROWIA LIPOLYTICA;

ASCOMYCOTA; CANDIDA ALBICANS; CANDIDA GLABRATA; CARRIER PROTEINS; EVOLUTION, MOLECULAR; GENOME, FUNGAL; KLUYVEROMYCES; MEMBRANE TRANSPORT PROTEINS; MITOCHONDRIA; MULTIGENE FAMILY; PROTEOME; SACCHAROMYCES CEREVISIAE; SPECIES SPECIFICITY; YARROWIA;

CANDIDA GLABRATA; DEBARYOMYCES HANSENII; KLUYVEROMYCES; KLUYVEROMYCES LACTIS; SACCHAROMYCES CEREVISIAE; YARROWIA LIPOLYTICA;

EID: 33644778757     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.046813     Document Type: Article

References (26)

1. AHEARN, D. G., S. P. MEYER and R. A. NICHOLS, 1968 Extracellular proteinases of yeasts and yeast-like fungi. Appl. Microbiol. 16: 1370-1374.
2. BOEKHOUT, T., 2005 Biodiversity gut feeling for yeasts. Nature 434: 449-451.
3. BUSCH, W., and M. H. SAIER, 2002 The transporter classification (TC) system. Crit. Rev. Biochem. Mol. Biol. 37: 287-337.
4. CASSIO, F., C. LEAO and N. VANUDEN, 1987 Transport of lactate and other short-chain monocarboxylates in the yeast Saccharomyces-cerevisiae. Appl. Environ. Microbiol. 53: 509-513.
5. CLIFTEN, P., P. SUDARSANAM, A. DESIKAN, L. FULTON, B. FULTON et al., 2003 Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Gene 301: 71-76.
6. DE HERTOGH, B., E. CARVAJAL, E. TALLA, B. DUJON, P. V. BARET et al., 2002 Phylogenetic classification of transporters and other membrane proteins from Saccharomyces cerevisiae. Funct. Integr. Genomics 2: 154-170.
7. DE HERTOGH, B., E. TALLA, F. TEKAIA, E. BEYNE, D. SHERMAN et al., 2003 Novel transporters from hemiascomycete yeasts. J. Mol. Microbiol. Biotechnol. 6: 19-28.
8. DIETRICH, F. S., S. VOEGELI, S. BRACHAT, A. LERCH, K. GATES et al., 2004 The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Gene 304: 304-307.
9. DUJON, B., D. SHERMAN, G. FISCHER, P. DURRENS, S. CASAREGOLA et al., 2004 Genome evolution in yeasts. Nature 430: 35-44.
10. DURRENS, P., and D. J. SHERMAN, 2005 A systematic nomenclature of chromosomal elements for hemiascomycete yeasts. Yeast 22: 337-342.
11. GALAGAN, J. E., S. E. CALVO, K. A. BORKOVICH, E. U. SELKER, N. D. READ et al., 2003 The genome sequence of the filamentous fungus Neurospora crassa. Nature 422: 859-868.
12. HITTINGER, C. T., A. ROKAS and S. B. CARROLL, 2004 Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts. Proc. Natl. Acad. Sci. USA 101: 14144-14149.
13. JONES, T., N. A. FEDERSPIEL, H. CHIBANA, J. DUNGAN, S. KALMAN et al., 2004 The diploid genome sequence of Candida albicans. Proc. Natl. Acad. Sci. USA 101: 7329-7334.
14. KELLIS, M., N. PATTERSON, M. ENDRIZZI, B. BIRREN and E. S. LANDER, 2003 Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254.
15. KELLIS, M., N. PATTERSON, B. BIRREN, B. BERGER and E. S. LANDER, 2004 Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery. J. Comput. Biol. 11: 319-355.
16. KROGH, A., B. LARSSON, G. VON HEIJNE and E. L. L. SONNHAMMER, 2001 Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305: 567-580.
17. KURTZMAN, C. P., and J. W. FELL, 1998 The Yeasts: A Taxonomic Study. Elsevier Science, Amsterdam.
18. LANGKJAER, R. B., P. F. CLIFTEN, M. JOHNSTON and J. PISKUR, 2003 Yeast genome duplication was followed by asynchronous differentiation of duplicated genes. Nature 421: 848-852.
19. OHNO, S., 1970 Evolution by Gene Duplication. Springer Verlag, Berlin/Heidelberg, Germany/New York.
20. ONISHI, T., A. KROGER, H. W. HELDT, E. PFAFF and M. KLINGENBERG, 1967 The response of the respiratory chain and adenine nucleotide system to oxidative phosphorylation in yeast mitochondria. Eur. J. Biochem. 1: 303-311.
21. PHILIPPSEN, P., K. KLEINE, R. POHLMANN, A. DUSTERHOFT, K. HAMBERG et al., 1997 The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. Nature 387: 93-98.
22. Saier, M. H., 2000 A functional-phylogenetic classification system for transmembrane solute transporters. Microbiol. Mol. Biol. Rev. 64: 354.
23. Souciet, J. L., M. Aigle, F. Artiguenave, G. Blandin, M. Bolotin-Fukuhara et al., 2000 Genomic exploration of the Hemiascomycetous yeasts. 1. A set of yeast species for molecular evolution studies. FEBS Lett. 487: 3-12.
24. TEKAIA, F., G. BLANDIN, A. MALPERTUY, B. LLORENTE, P. DURRENS et al., 2000 Genomic exploration of the Hemiascomycetous yeasts: 3. Methods and strategies used for sequence analysis and annotation. FEBS Lett. 487: 17-30.
25. TUSNADY, G. E., and I. SIMON, 2001 The HMMTOP transmembrane topology prediction server. Bioinformatics 17: 849-850.
26. WOLFE, K. H., and D. C. SHIELDS, 1997 Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.