Phylogenetics and evolution of nematode-trapping fungi (Orbiliales) estimated from nuclear and protein coding genes

Mycologia

Volumn 97, Issue 5, 2005, Pages 1034-1046

  Li, Yan ^a   Hyde, Kevin D ^b   Jeewon, Rajesh ^b   Cai, Lei ^b   Vijaykrishna, Dhanasekaran ^b   Zhang, Keqin ^a  

^a YUNNAN UNIVERSITY   (China)

^b UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

tubulin; Evolution; Fungi; Phylogeny; Predatory; rDNA; Systematics

Indexed keywords

FUNGAL DNA; FUNGAL PROTEIN; RIBOSOME DNA; RNA 28S; RNA 5.8S; TUBULIN;

EVOLUTION; FUNGUS; PHYLOGENETICS; PHYLOGENY;

ANIMAL; ARTICLE; ASCOMYCETES; CLASSIFICATION; DNA SEQUENCE; EVOLUTION; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; MORPHOGENESIS; NEMATODE; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY;

ANIMALS; ASCOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL; EVOLUTION; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; MORPHOGENESIS; NEMATODA; PHYLOGENY; RNA, RIBOSOMAL, 28S; RNA, RIBOSOMAL, 5.8S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; TUBULIN;

ARTHROBOTRYS; FUNGI; ORBILIA; ORBILIALES;

EID: 33644761990     PISSN: 00275514     EISSN: 00275514     Source Type: Journal    
DOI: 10.3852/mycologia.97.5.1034     Document Type: Article

References (53)

1. Ahrén D, Faedo M, Rajashekar B, Tunlid A. 2004. Low genetic diversity among isolates of the nematode-trapping fungus Duddingtonia flagrans: evidence for recent worldwide dispersion from a single common ancestor. Mycol Res 108:1205-1214.
2. _, Ursing BM, Tunlid A. 1998. Phylogeny of nematode-trapping fungi based on 18r DNA sequences. FEMS Microbiol Lett 158:179-184.
3. Barron GL. 1977. The nematode-destroying fungi. University of Guelph, Ontario. Lancaster, Pennsylvania: Lancaster Press. Top Mycobiol 1:1-140.
4. _, Thorn RG. 1987. Destruction of nematodes by species of Pleurotus. Can J Bot 65:774-778.
5. Bunyard BA, Nicholson MS, Royse DJ. 1994. A systematic assessment of Morchella using RFLP analysis of the 28S rRNA gene. Mycologia 86:762-772.
6. Cooke RC, Dickinson CH. 1965. Nematode-trapping species of Dactylella and Monacrosporium. Trans Br Mycol Soc 48:621-629.
7. de Hoog GS, van Oorschot CAN. 1985. Taxonomy of the Dactylaria complex IV-VI. Key to the genera and checklist of epithets. In: de Hoog GS, ed. Taxonomy of the Dactylaria complex. Stud Mycol 26:97-122.
8. Dong JY, Zhao ZX, Cai L, Liu SQ, Zhang HR, Duan M, Zhang KQ. 2004. Nematicidal effect of freshwater fungal cultures against the pine-nematode, Bursaphelenchus xylophilus. Fung Divers 15:125-135.
9. Drechsler C. 1937. Some hyphomycetes that prey on free-living terricolous nematodes. Mycologia 29:447-552.
10. _. 1950. Several species of Dactylella and Dactylaria that capture free-living nematodes. Mycologia 42:1-79.
11. _. 1954. Some hyphomycetes that capture eelworms in Southern States. Mycologia 46:762-782.
12. _. 1962. Some clampless hyphomycetes predacious on nematodes and rhizopods. Sydowia 15:9-25 (1961).
13. Duddington CL. 1951a. The ecology of predacious fungi. I. Preliminary survey. Trans Br Mycol Soc 34:322-331.
14. _. 1951b. Further records of British predaceous fungi II. Trans Br Mycol Soc 34:194-209.
15. _. 1955. Notes on the technique of handing predacious fungi. Trans Br Mycol Soc 38:97-103.
16. Farris JS, Kallersjo M, Kluge AG, Bult C. 1995. Testing significance of incongruence. Cladistics 10:315-319.
17. Felsenstein J. 1985. Confidence intervals on phylogenetics: an approach using bootstrap. Evolution 39:783-791.
18. Glass NL, Donaldson GC. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes for filamentous Ascomycetes. Appl Environ Microbiol 61:1323-1330.
19. Glockling SL, Dick MW. 1994. Dactylella megalobrocha, a new species of nematophagous fungus with constricting ring. Mycol Res 98:845-853.
20. Hagedorn G, Scholler M. 1999. A reevaluation of predatory orbiliaceous fungi. I. Phylogenetic analysis using rDNA sequence data. Sydowia 51:27-48.
21. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
22. Huelsenbeck JP, Bull JJ, Cunningham CW. 1996. Combining data in phylogenetic analysis. TREE 11:152-158.
23. _, Ronquist FR. 2001. MrBayes: Bayesian inference of phylogenetic trees. Biometrics 17:754-755.
24. Jeewon R, Liew ECY, Hyde KD. 2002. Phylogenetic relationships of Pestalotiopsis and allied genera inferred from ribosomal DNA sequences a morphological characters. Mol Phylogenet Evol 25:378-392.
25. _, _, _. 2004. Phylogenetic evaluation of species nomenclature of Pestalotiopsis in relation to host association. Fung Divers 17:39-55.
26. Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Monro HN, ed. Mammalian protein metabolism. New York: Academic Press.
27. Kano S, Aimi R, Masumoto A, Kitamoto Y, Morinaga T. 2004. Physiology and molecular characteristics of a pine wilt nematode-trapping fungus, Monacrosporium megalosporum. Curr Microbiol 49:158-164.
28. Kishino H, Hasegawa M. 1989. Evaluation of the maximum likelihood model estimates of the evolutionary tree topologies from sequence data, and the branching order in Homonoidea. J Mol Evol 29:170-179.
29. Liou GY, Tzean SS. 1997. Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences. Mycologia 89:876-884.
30. Liu XF, Zhang KQ. 2003. Dactylella shizishanna sp. nov., from Shizi Mountain, China. Fung Divers 14:103-107.
31. Liu XZ, Zhang KQ. 1994. Nematode-trapping species of Monacrosporium with special reference to two new species. Mycol Res 98:862-868.
32. McCulloch JS. 1977. New species of nematophagous fungi from Queensland. Trans Br Mycol Soc 68:173-179.
33. Mekhtieva NA. 1967. [On systematics of some nematophagous fungi.] Mikol Fitopatol 1:269-279.
34. _. 1979. Khishchnye nematofagovye Griby-Gifomitsety [Predacious nematophagous hyphomycetes]. Akademiya Nauk Azerbaidzhanskoi SSR, Baku, 244 p.
35. Nees van Esenbeck CGD. 1817. Das System der Pilze und Schwämme. Würzburg.
36. Nylander JAA. 2004. MrModeltest 2.1. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
37. Page RDM. 1996. Treeview: an application to display phylogenetic trees on personal computers. CABIOS 12:357-358.
38. Pfister DH. 1997. Castor, Pollux and life histories of fungi. Mycologia 89:1-23.
39. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 49:817-818.
40. Rifai MA. 1968. The hyphomycete genus Dactylaria Sacc. Reinwardtia 7:357-374.
41. Rubner A. 1996. Revision of predacious hyphomycetes in the Dactylella-Monacrosporium complex. Stud Mycol 39:1-134.
42. Saccardo PA. 1886. Sylloge Fungorum. Vol. IV. Padova.
43. Schenck S, Kendrick WB, Pramer D. 1977. A new nematode-trapping hyphomycete and a reevaluation of Dactylaria and Arthrobotrys. Can J Bot 55:977-985.
44. Scheuer C, Webster J. 1990. Dactylella arcuata sp. nov., a nematode-trapping hyphomycete. Mycol Res 94:718-720.
45. Scholler M, Hagedorn G, Rubner A. 1999. A reevaluation of predatory orbiliaceous fungi. II. A new generic concept. Sydowia 51:89-113.
46. Subramanian CV. 1963. Dactylella, Monacrosporium and Dactylina. J Indian Bot Soc 42:291-300.
47. Swofford DL. 2002. PAUP*: Phylogenetic Analysis Using Parsimony (*and other methods). Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
48. Templeton AR. 1983. Phylogenetic inference from restriction endonuclease cleavage sites maps with particular reference to the evolution of humans and the apes. Evolution 37:269-285.
49. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882.
50. Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
51. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DA, Sninsky JJ, White TJ, eds. PCR Protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315-322.
52. Wyborn CHE, Priest D, Duddington CL. 1969. Selective technique for the determination of nematophagous fungi in soil. Soil Biol Biochem 1:101-102.
53. Zhang KQ, Liu XZ, Cao L. 1996. Nematophagous species of Monacrosporium from China. Mycol Res 100:274-276.