The effect of IHF on σS selectivity of the phoA and pst promoters of Escherichia coli

Archives of Microbiology

Volumn 185, Issue 3, 2006, Pages 234-237

  Taschner, Natalia Pasternak ^a   Yagil, Ezra ^b   Spira, Beny ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b TEL AVIV UNIVERSITY   (Israel)

Author keywords

Escherichia coli; IHF; PHO regulon; pst operon; rpoS

Indexed keywords

CYTOSINE; INTEGRATION HOST FACTOR; PHOSPHATE; RNA POLYMERASE; SIGMA OPIATE RECEPTOR; ALKALINE PHOSPHATASE; BACTERIAL PROTEIN; ESCHERICHIA COLI PROTEIN; INTEGRATION HOST FACTOR, E COLI; SIGMA FACTOR; SIGMA FACTOR KATF PROTEIN, BACTERIA;

ARTICLE; BACTERIAL CELL; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; NONHUMAN; OPERON; PHOSPHATE TRANSPORT; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; REGULON; TRANSCRIPTION INITIATION; CULTURE MEDIUM; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PLASMID; SITE DIRECTED MUTAGENESIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

ALKALINE PHOSPHATASE; BACTERIAL PROTEINS; CULTURE MEDIA; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; INTEGRATION HOST FACTORS; MUTAGENESIS, SITE-DIRECTED; OPERON; PHOSPHATES; PLASMIDS; PROMOTER REGIONS (GENETICS); REGULON; SIGMA FACTOR;

EID: 33644759551     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-005-0082-4     Document Type: Article

References (25)

1. Altuvia S, Almiron M, Huisman G, Kolter R, Storz G (1994) The dps promoter is activated by OxyR during growth and by IHF and sigma S in stationary phase. Mol Microbiol 13:265-272
2. Arfin SM, et al. (2000) Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J Biol Chem 275:29672-29684
3. Aviv M, Giladi H, Schreiber G, Oppenheim AB, Glaser G (1994) Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulation. Mol Microbiol 14:1021-1031
4. Churchward G, Belin D, Nagamine Y (1984) A pSC101-derived plasmid which shows no sequence homology to other commonly used cloning vectors. Gene 31:165-171
5. Colland F, Barth M, Hengge-Aronis R, Kolb A (2000) Sigma factor selectivity of Escherichia coli RNA polymerase: role for CRP, IHF and lrp transcription factors. EMBO J 19:3028-3037
6. Ditto MD, Roberts D, Weisberg RA (1994) Growth phase variation of integration host factor level in Escherichia coli. J Bacteriol 176:3738-3748
7. Goosen N, van de Putte P (1995) The regulation of transcription initiation by integration host factor. Mol Microbiol 16:1-7
8. Izutsu K, et al (2001) Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase. J Bacteriol 183:2765-2773
9. Lacour S, Kolb A, Landini P (2003) Nucleotides from -16 to -12 determine specific promoter recognition by bacterial sigma S-RNA polymerase. J Biol Chem 278:37160-37168
10. Lange R, Barth M, Hengge-Aronis R (1993) Complex transcriptional control of the sigma S-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationary-phase response of Escherichia coli. J Bacteriol 175:7910-7917
11. Lee SJ, Gralla JD (2001) Sigma38 (rpoS) RNA polymerase promoter engagement via -10 region nucleotides. J Biol Chem 276:30064-30071
12. Levinthal C, Signer ER, Fetherolf K (1962) Reactivation and hybridization of reduced alkaline phosphatase. Proc Natl Acad Sci USA 48:1230-1237
13. Makino K, Amemura M, Kawamoto T, Kimura S, Shinagawa H, Nakata A, Suzuki M (1996) DNA binding of PhoB and its interaction with RNA polymerase. J Mol Biol 259:15-26
14. Miller HI, Friedman DI (1980) An E. coli gene product required for lambda site-specific recombination. Cell 20:711-719
15. Rao NN, Roberts MF, Torriani A, Yashphe J (1993) Effect of glpT and glpD mutations on expression of the phoA gene in Escherichia coli. J Bacteriol 175:74-79
16. Rice PA, Yang S, Mizuuchi K, Nash HA (1996) Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 87:1295-1306
17. Sambrook J, Russel D (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
18. Spira B, Silberstein N, Yagil E (1995) Guanosine 3′,5′- bispyrophosphate (ppGpp) synthesis in cells of Escherichia coli starved for Pi. J Bacteriol 177:4053-4058
19. Spira B, Yagil E (1999) The integration host factor (IHF) affects the expression of the phosphate-binding protein and of alkaline phosphatase in Escherichia coli. Curr Microbiol 38:80-85
20. Taschner NP, Yagil E, Spira B (2004) A differential effect of sigma S on the expression of the PHO regulon genes of Escherichia coli. Microbiology 150:2985-2992
21. Wanner B (1996) Escherichia coli and Salmonella: cellular and molecular biology. In: Neidhardt FC, Curtiss RI (eds) ASM Press, Washington DC, pp 1357-1381
22. Weber H, Polen T, Heuveling J, Wendisch VF, Hengge R (2005) Genome-wide analysis of the general stress response network in Escherichia coli: sigma S-dependent genes, promoters, and sigma factor selectivity. J Bacteriol 187:1591-1603
23. Weisberg RA, et al (1996) Nomenclature of the genes encoding IHF. Mol Microbiol 19:642
24. Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119
25. Zgurskaya HI, Keyhan M, Matin A (1997) The sigma S level in starving Escherichia coli cells increases solely as a result of its increased stability, despite decreased synthesis. Mol Microbiol 24:643-651