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Volumn 20, Issue 2, 2006, Pages 105-113

A novel RT-PCR approach for detection and characterization of citrus viroids

Author keywords

Cachexia; Citrus bent leaf viroid (CBLVd); Citrus exocortis viroid (CEVd); Citrus viroid III (CVd III); Citrus viroid IV (CVd IV).; Exocortis; Hop stunt viroid (HSVd)

Indexed keywords

ACETIC ACID; NUCLEIC ACID;

EID: 33644756514     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2005.11.001     Document Type: Article
Times cited : (84)

References (34)
  • 2
    • 0022628796 scopus 로고
    • Characterization of viroid-like RNAs associated with the citrus exocortis syndrome
    • N. Duran-Vila, R. Flores, and J.S. Semancik Characterization of viroid-like RNAs associated with the citrus exocortis syndrome Virology 150 1986 75 84
    • (1986) Virology , vol.150 , pp. 75-84
    • Duran-Vila, N.1    Flores, R.2    Semancik, J.S.3
  • 3
    • 0001016725 scopus 로고
    • A definition of citrus viroid groups and their relationship to the exocortis disease
    • N. Duran-Vila, C.N. Roistacher, R. Rivera-Bustamante, and J.S. Semancik A definition of citrus viroid groups and their relationship to the exocortis disease J Gen Virol 69 1988 3069 3080
    • (1988) J Gen Virol , vol.69 , pp. 3069-3080
    • Duran-Vila, N.1    Roistacher, C.N.2    Rivera-Bustamante, R.3    Semancik, J.S.4
  • 4
    • 0015291784 scopus 로고
    • Exocortis virus: An infectious free-nucleic acid plant virus with unusual properties
    • J.S. Semancik, and L.G. Weathers Exocortis virus: an infectious free-nucleic acid plant virus with unusual properties Virology 46 1972 456 466
    • (1972) Virology , vol.46 , pp. 456-466
    • Semancik, J.S.1    Weathers, L.G.2
  • 5
    • 0000272916 scopus 로고
    • Citrus cachexia viroid, a new viroid of citrus: Relationship to viroids of the exocortis disease complex
    • J.S. Semancik, C.N. Roistacher, R. Rivera-Bustamante, and N. Duran-Vila Citrus cachexia viroid, a new viroid of citrus: relationship to viroids of the exocortis disease complex J Gen Virol 69 1988 3059 3068
    • (1988) J Gen Virol , vol.69 , pp. 3059-3068
    • Semancik, J.S.1    Roistacher, C.N.2    Rivera-Bustamante, R.3    Duran-Vila, N.4
  • 6
    • 0001506807 scopus 로고
    • Replication of in vitro constructed viroid mutants: Location of the pathogenicity modulating domain of citrus exocortis viroid
    • J. Visvader, and R. Symons Replication of in vitro constructed viroid mutants: location of the pathogenicity modulating domain of citrus exocortis viroid EMBO J 5 1986 2051 2055
    • (1986) EMBO J , vol.5 , pp. 2051-2055
    • Visvader, J.1    Symons, R.2
  • 7
    • 0032424039 scopus 로고    scopus 로고
    • Regulation of pathogenicity in hop stunt viroid related group II citrus viroids
    • K. Reanwarakorn, and J.S. Semancik Regulation of pathogenicity in hop stunt viroid related group II citrus viroids J Gen Virol 79 1998 3163 3171
    • (1998) J Gen Virol , vol.79 , pp. 3163-3171
    • Reanwarakorn, K.1    Semancik, J.S.2
  • 8
    • 0030880384 scopus 로고    scopus 로고
    • Application of selected viroids for dwarfing and enhancement of production of 'Valencia' orange
    • J.S. Semancik, A.G. Rakowski, J.A. Bash, and D.J. Gumpf Application of selected viroids for dwarfing and enhancement of production of 'Valencia' orange J Hort Sci 72 1997 563 570
    • (1997) J Hort Sci , vol.72 , pp. 563-570
    • Semancik, J.S.1    Rakowski, A.G.2    Bash, J.A.3    Gumpf, D.J.4
  • 9
    • 0000325858 scopus 로고    scopus 로고
    • Viroid dwarfing for high density plantings
    • R.J. Hutton, P. Broadbent, and K.B. Bevington Viroid dwarfing for high density plantings Hort Rev 24 2000 277 317
    • (2000) Hort Rev , vol.24 , pp. 277-317
    • Hutton, R.J.1    Broadbent, P.2    Bevington, K.B.3
  • 10
    • 7444264637 scopus 로고    scopus 로고
    • Citrus viroids: Symptom expression and effect on vegetative growth and yield on clementine trees grafted on trifoliate orange
    • C. Vernière, X. Perrier, C. Dubois, A. Dubois, L. Botella, and C. Chabrier Citrus viroids: symptom expression and effect on vegetative growth and yield on clementine trees grafted on trifoliate orange Plant Dis 88 2004 1189 1197
    • (2004) Plant Dis , vol.88 , pp. 1189-1197
    • Vernière, C.1    Perrier, X.2    Dubois, C.3    Dubois, A.4    Botella, L.5    Chabrier, C.6
  • 11
    • 0025815966 scopus 로고
    • Nucleotide sequence of a new viroid species, citrus bent leaf viroid (CBLVd) isolated from grapefruit in Israel
    • L. Ashulin, O. Lachman, O. Hadas, and M. Bar-Joseph Nucleotide sequence of a new viroid species, citrus bent leaf viroid (CBLVd) isolated from grapefruit in Israel Nucleic Acids Res 19 1991 4767
    • (1991) Nucleic Acids Res , vol.19 , pp. 4767
    • Ashulin, L.1    Lachman, O.2    Hadas, O.3    Bar-Joseph, M.4
  • 12
    • 0028661039 scopus 로고
    • Nucleotide sequence and structural features of the Group III citrus viroids
    • A.G. Rakowski, J.A. Szychowski, Z.S. Avena, and J.S. Semancik Nucleotide sequence and structural features of the Group III citrus viroids J Gen Virol 75 1994 3581 3584
    • (1994) J Gen Virol , vol.75 , pp. 3581-3584
    • Rakowski, A.G.1    Szychowski, J.A.2    Avena, Z.S.3    Semancik, J.S.4
  • 13
    • 0026409197 scopus 로고
    • Primary and secondary structure of citrus viroid IV (CVd IV), a new chimeric viroid present in dwarfed grapefruit in Israel
    • H. Puchta, K. Ramm, R. Luckinger, R. Hadas, M. Bar-Joseph, and H.L. Sänger Primary and secondary structure of citrus viroid IV (CVd IV), a new chimeric viroid present in dwarfed grapefruit in Israel Nucleic Acids Res 19 1991 6640
    • (1991) Nucleic Acids Res , vol.19 , pp. 6640
    • Puchta, H.1    Ramm, K.2    Luckinger, R.3    Hadas, R.4    Bar-Joseph, M.5    Sänger, H.L.6
  • 14
    • 0033734701 scopus 로고    scopus 로고
    • A population of variants of a viroid closely related to citrus viroid-I in citrus plants
    • T. Ito, H. Ieki, and K. Ozaki A population of variants of a viroid closely related to citrus viroid-I in citrus plants Arch Virol 145 2000 2105 2114
    • (2000) Arch Virol , vol.145 , pp. 2105-2114
    • Ito, T.1    Ieki, H.2    Ozaki, K.3
  • 15
    • 0035001595 scopus 로고    scopus 로고
    • Characterization of a new citrus viroid species tentatively termed citrus viroid OS
    • T. Ito, H. Ieki, K. Ozaki, and T. Ito Characterization of a new citrus viroid species tentatively termed citrus viroid OS Arch Virol 146 2001 975 982
    • (2001) Arch Virol , vol.146 , pp. 975-982
    • Ito, T.1    Ieki, H.2    Ozaki, K.3    Ito, T.4
  • 16
    • 1542304791 scopus 로고
    • Exocortis. Indexing procedures for 15 citrus diseases of citrus trees
    • ARS, USDA;
    • Calavan EC. Exocortis. Indexing procedures for 15 citrus diseases of citrus trees. Agricultural handbook no. 33. ARS, USDA; 1968. p. 23-34.
    • (1968) Agricultural Handbook No. 33 , pp. 23-34
    • Calavan, E.C.1
  • 18
    • 1042273182 scopus 로고    scopus 로고
    • Indexing of citrus viroids by imprint hybridization: Comparision with other detection methods
    • J.V. Da Graça R.F. Lee R.K. Yokomi IOCV Riverside, CA
    • A. Palacio, X. Foissac, and N. Duran-Vila Indexing of citrus viroids by imprint hybridization: comparision with other detection methods J.V. Da Graça R.F. Lee R.K. Yokomi Proceedings of the 14th conference international organisation of citrus virol 2000 IOCV Riverside, CA 294 301
    • (2000) Proceedings of the 14th Conference International Organisation of Citrus Virol , pp. 294-301
    • Palacio, A.1    Foissac, X.2    Duran-Vila, N.3
  • 20
    • 0001268688 scopus 로고
    • Enzymatic cDNA amplification of citrus exocortis and cachexia viroids from infected citrus hosts
    • X. Yang, A. Hadidi, and S.M. Garnsey Enzymatic cDNA amplification of citrus exocortis and cachexia viroids from infected citrus hosts Phytopathology 82 1992 279 285
    • (1992) Phytopathology , vol.82 , pp. 279-285
    • Yang, X.1    Hadidi, A.2    Garnsey, S.M.3
  • 21
    • 0032929713 scopus 로고    scopus 로고
    • A simple method of nucleic acid extraction without tissue homogenisation for detecting viroids by hybridisation and RT-PCR
    • K. Nakajara, T. Hataya, and I. Uyeda A simple method of nucleic acid extraction without tissue homogenisation for detecting viroids by hybridisation and RT-PCR J Virol Methods 77 1999 47 58
    • (1999) J Virol Methods , vol.77 , pp. 47-58
    • Nakajara, K.1    Hataya, T.2    Uyeda, I.3
  • 22
    • 0036883669 scopus 로고    scopus 로고
    • Simultaneous detection of six citrus viroids and Apple stem grooving virus from citrus plants by multiplex reverse transcription polymerase chain reaction
    • T. Ito, H. Ieki, and K. Ozaki Simultaneous detection of six citrus viroids and Apple stem grooving virus from citrus plants by multiplex reverse transcription polymerase chain reaction J Virol Methods 106 2002 235 239
    • (2002) J Virol Methods , vol.106 , pp. 235-239
    • Ito, T.1    Ieki, H.2    Ozaki, K.3
  • 23
    • 4444383087 scopus 로고    scopus 로고
    • Development of a one tube-one sep RT-PCR protocol for the detection of seven viroids in four genera: Apscaviroid, hostuviroid, pelamoviroid
    • E. Ragozzino, F. Faggioli, and M. Barba Development of a one tube-one sep RT-PCR protocol for the detection of seven viroids in four genera: apscaviroid, hostuviroid, pelamoviroid J Virol Methods 121 2004 25 29
    • (2004) J Virol Methods , vol.121 , pp. 25-29
    • Ragozzino, E.1    Faggioli, F.2    Barba, M.3
  • 24
    • 0032733492 scopus 로고    scopus 로고
    • Discrimination of cachexia disease agents among citrus variants of hop stunt viroid
    • K. Reanwarakorn, and J.S. Semancik Discrimination of cachexia disease agents among citrus variants of hop stunt viroid Ann Appl Biol 135 1999 481 487
    • (1999) Ann Appl Biol , vol.135 , pp. 481-487
    • Reanwarakorn, K.1    Semancik, J.S.2
  • 26
    • 25444509843 scopus 로고    scopus 로고
    • Genetic variation and population structure of a Citrus exocortis viroid (CEVd) isolate and the progenies of infectious haplotypes
    • M. Gandía, L. Rubio, A. Palacio, and N. Duran-Vila Genetic variation and population structure of a Citrus exocortis viroid (CEVd) isolate and the progenies of infectious haplotypes Arch Virol 150 2005 1945 1957
    • (2005) Arch Virol , vol.150 , pp. 1945-1957
    • Gandía, M.1    Rubio, L.2    Palacio, A.3    Duran-Vila, N.4
  • 28
    • 0022432038 scopus 로고
    • Eleven new sequence variants of citrus exocortis viroid and the correlation of sequence with pathogenicity
    • J.E. Visvader, and R.H. Symons Eleven new sequence variants of citrus exocortis viroid and the correlation of sequence with pathogenicity Nucleic Acids Res 13 1985 2907 2920
    • (1985) Nucleic Acids Res , vol.13 , pp. 2907-2920
    • Visvader, J.E.1    Symons, R.H.2
  • 30
    • 0016438120 scopus 로고
    • Physical properties of a minimal infectious RNA (viroid) associated with the exocortis disease
    • J.S. Semancik, T.J. Morris, L.G. Weathers, G.F. Rordorf, and D.R. Kearns Physical properties of a minimal infectious RNA (viroid) associated with the exocortis disease Virology 63 1975 160 167
    • (1975) Virology , vol.63 , pp. 160-167
    • Semancik, J.S.1    Morris, T.J.2    Weathers, L.G.3    Rordorf, G.F.4    Kearns, D.R.5
  • 31
    • 0023277545 scopus 로고
    • Single step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • P. Chomczynski, and N. Sacchi Single step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal Biochem 162 1987 156
    • (1987) Anal Biochem , vol.162 , pp. 156
    • Chomczynski, P.1    Sacchi, N.2
  • 32
    • 0030462020 scopus 로고    scopus 로고
    • Studies of diagnosis of hop stunt viroid in fruit trees: Detection by molecular hybridisation and relationship with specific maladies affecting peach and pear trees
    • N. Astruc, J.F. Marcos, G. Macquaire, T. Candresse, and V. Pallás Studies of diagnosis of hop stunt viroid in fruit trees: detection by molecular hybridisation and relationship with specific maladies affecting peach and pear trees Eur J Plant Pathol 102 1996 837 846
    • (1996) Eur J Plant Pathol , vol.102 , pp. 837-846
    • Astruc, N.1    Marcos, J.F.2    MacQuaire, G.3    Candresse, T.4    Pallás, V.5
  • 33
    • 0005278952 scopus 로고    scopus 로고
    • Studies on the incidence of hop stunt viroid in apricot trees (Prunus americana) by using an easy and short extraction method to analyze a large number of samples
    • M.C. Cañizares, J.F. Marcos, and V. Pallás Studies on the incidence of hop stunt viroid in apricot trees (Prunus americana) by using an easy and short extraction method to analyze a large number of samples Acta Hort 472 1998 581 585
    • (1998) Acta Hort , vol.472 , pp. 581-585
    • Cañizares, M.C.1    Marcos, J.F.2    Pallás, V.3
  • 34
    • 0347816608 scopus 로고    scopus 로고
    • Nested RT-PCR in a single closed tube
    • J.M.S. Bartlett D. Stirling Humana Press Proc Totowa, New Jersey
    • A. Olmos, O. Esteban, E. Bertolini, and M. Cambra Nested RT-PCR in a single closed tube J.M.S. Bartlett D. Stirling RT-PCR protocols 2003 Humana Press Proc Totowa, New Jersey 151 159
    • (2003) RT-PCR Protocols , pp. 151-159
    • Olmos, A.1    Esteban, O.2    Bertolini, E.3    Cambra, M.4


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