Genetic variation and selection response in model breeding populations of Brassica rapa following a diversity bottleneck

Genetics

Volumn 172, Issue 1, 2006, Pages 457-465

  Briggs, William H ^a   Goldman, Irwin L ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; ARTIFICIAL SELECTION; BOTTLENECK POPULATION; BREEDING; BREEDING LINE; CONTROLLED STUDY; COTYLEDON; DOMESTICATION; FEMALE; GENETIC GAIN; GENETIC MARKER; GENETIC SELECTION; GENETIC VARIABILITY; HERITABILITY; MALE; MOLECULAR EVOLUTION; NONHUMAN; POPULATION GENETICS; PRIORITY JOURNAL; TURNIP;

BRASSICA RAPA; BREEDING; DNA, PLANT; GENE FREQUENCY; GENETIC MARKERS; GENETICS, POPULATION; GEOGRAPHY; MODELS, GENETIC; PHENOTYPE; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SEEDS; SELECTION (GENETICS); VARIATION (GENETICS);

BRASSICA RAPA; BRASSICA RAPA SUBSP. RAPA;

EID: 33644745199     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.040899     Document Type: Article

References (40)

1. e from temporally spaced samples using a coalescent-based likelihood. Genetics 170: 955-967.
2. BERTHIER, P., M. A. BEAUMONT, J. M. CORNUET and G. LUIKART, 2002 Likelihood-based estimation of the effective populations size using temporal changes in allele frequencies: a genealogical approach. Genetics 160: 741-751.
3. BRIDGES, W. C., and S. J. KNAPP, 1987 Probabilities of negative estimates of genetic variances. Theor. App. Gen. 74: 269-274.
4. BRYANT, E. H., and L. M. MEFFERT, 1995 An analysis of selection response in relation to a population bottleneck. Evolution 49: 626-634.
5. BRYANT, E. H., S. A. MCCOMMAS and L. M. COMBS, 1986 The effect of an experimental bottleneck upon quantitative genetic variation in the housefly. Genetics 114: 1191-1211.
6. CHEVERUD, J. M., and E. J. ROUTMAN, 1996 Epistasis as a source of increased additive genetic variance at population bottlenecks. Evolution 50: 1042-1051.
7. CHEVERUD, J. M., T. T. VAUGHN, S. PLETSCHER, K. KING-ELLISON, J. BAILIFF, et al., 1999 Epistasis and the evolution of additive genetic variance in populations that pass through a bottleneck. Evolution 53: 1009-1018.
8. COCKERHAM, C. C., and H. TACHIDA, 1988 Permanancy of response to selection for quantitative characters in finite populations. Proc. Natl. Acad. Sci. USA 85: 1563-1565.
9. COMSTOCK, R. E., and H. F. ROBINSON, 1948 The components of genetic variance in populations of biparental progenies and their use in estimating the average degree of dominance. Biometrics 4: 254-266.
10. CORTEZ-MENDOZA, H., and A. R. HALLAUER, 1979 Divergent mass selection for ear length in maize. Crop Sci. 19: 175-178.
11. DUDLEY, J.W., and R. J. LAMBERT, 2004 100 generations of selection for oil and protein in corn. Plant Breed. Rev. 24(I): 79-110.
12. EDWARDS, J. W., and K. R. LAMKEY, 2003 Dominance and genetic drift: predicted effects of population subdivision in a maize population. Crop Sci. 43: 2006-2017.
13. FALCONER, D. S., 1992 Early selection experiments. Annu. Rev. Genet. 26: 1-14.
14. FALCONER, D. S., and T. F. C. MACKAY, 1996 Introduction to Quanitative Genetics. Longman Group, Essex, UK.
15. FERNANDEZ, A., M. A. TOROAND C. LOPEZ-FANJUL, 1995 The effect of inbreeding on the redistribution of genetic variance of fecundity and viability in Tribolium castaneum. Heredity 75: 376-381.
16. FUTTERER, J., A. GISEL, V. IGLESIAS, A. KLOTI, B. KOST et al., 1995 Standard molecular techniques for the analysis of transgenic plants, pp. 215-217 in Gene Transfer to Plants, edited by I. POTRYKUS and G. SPANGENBERG. Springer, New York.
17. GOODNIGHT, C. J., 1988 Epistasis and the effect of founder events on the additive genetic variance. Evolution 42: 441-454.
18. HALLAUER, A. R., and J. B. MIRANDA, 1988 Quantitative Genetics in Maize Breeding. Iowa State University Press, Ames, IA.
19. HILL, W. G., and L. BUNGER, 2004 Inferences on the genetics of quantitative traits from long-term selection in laboratory and domestic animals. Plant Breed. Rev. 24(II): 169-210.
20. HILL, W. G., and A. CABALLERO, 1992 Artificial selection experiments. Annu. Rev. Ecol. Syst. 23: 287-310.
21. JACCARD, P., 1908 Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud Sci. Nat. 44: 223-270.
22. LOPEZ-FANJUL, C., and A. VILLAVERDE, 1989 Inbreeding increases genetic variance for viability in Drosophila melanogaster. Evolution 43: 1800-1804.
23. LYNCH, M., and B. G. MILLIGAN, 1994 Analysis of population genetic structure with RAPD markers. Mol. Ecol. 9: 91-99.
24. MAITA, R., and J. G. COORS, 1996 Twenty cycles of biparental mass selection for prolificacy in the open-pollinated maize population Golden Glow. Crop Sci. 36: 1527-1532.
25. MAYR, E., 1954 Changes in the genetic environment and evolution, pp. 157-180 in Evolution As a Process, edited by J. HUXLEY, A. C. HARDY, and E. B. FORD. GEORGE ALLEN & Unwin, London.
26. MAYR, E., 1963 Animal Species and Evolution. Harvard University Press, Cambridge, MA.
27. NACIRI-GRAVEN, Y., and J. GOUDET, 2003 The additive genetic variance after bottlenecks is affected by the number of loci involved in epistatic interactions. Evolution 57: 706-716.
28. NEI, M., T. MARUYAMA and R. CHAKRABORTY, 1975 The bottleneck effect and genetic variability in populations. Evolution 29: 1-10.
29. NATIONAL INSTITUTES OF HEALTH, 2002 Public domain image analysis software (http://rsb.info.nih.gov/nih-image/).
30. REVERTER, A., C. J. KAISER and C. H. MALLINCKRODT, 1998 A boot-strap approach to confidence regions for genetic parameters from method R estimates. J. Anim. Sci. 76: 2263-2271.
31. ROBERTSON, A., 1952 The effect of inbreeding on the variation due to recessive genes. Genetics 37: 189-207.
32. RUANO, R. G., L. S. SILVELA, C. LOPEZ-FANJUL and M. A. TORO, 1996 Changes in the additive variance of a fitness-related trait with inbreeding in Tribolium castaneum. J. Anim. Breed. Gen. 113: 93-97.
33. SACCHERI, I. J., R. A. NICHOLS and P. M. BRAKEFIELD, 2001 Effects of bottlenecks on quantitative genetic variation in the butterfly Bicyclus anynana. Genet. Res. 77: 167-181.
34. VEKEMANS, X., 2002 AFLP-SURV version 1.0. Laboratoire de Genetique et Ecologie Vegetale, Universite Libre de Bruxelles, Brussels.
35. VOS, P., R. HOGERS, M. BLEEKER, M. REIJANS, T. VAN DE LEE et al., 1995 AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
36. WHITT, S. R., L. M. WILSON, M. I. TENAILLON, B. S. GAUT and E. S. BUCKLER, 2002 Genetic diversity and selection in the maize starch pathway. Proc. Natl. Acad. Sci. USA 99: 12959-12962.
37. WILLIAMS, P. H., and C. B. HILL, 1986 Rapid-cycling populations of Brassica. Science 232: 1385-1389.
38. WILLIS, J. H., and H. A. ORR, 1993 Increased heritable variation following population bottlenecks: the role of dominance. Evolution 47: 949-957.
39. WRIGHT, S., 1968 Evolution and Genetics of Populations, Vol I: Genetic and Biometric Foundations. University of Chicago Press, Chicago.
40. ZHANG, X.-S., J. WANG and W. G. HILL, 2004 Redistribution of gene frequency and changes of genetic variation following a bottleneck in population size. Genetics 167: 1475-1492.