Structure of inorganic pyrophosphatase from Helicobacter pylori

Acta Crystallographica Section D: Biological Crystallography

Volumn 61, Issue 11, 2005, Pages 1459-1464

  Chun, Ai Wu ^a   Lokanath, Neratur K ^a   Dong, Young Kim ^a   Hye, Jin Park ^a   Hwang, Hye Yeon ^a   Seong, Tae Kim ^a   Se, Won Suh ^b   Kyeong, Kyu Kim ^a  

^a Sungkyunkwan University School of Medicine   (South Korea)

^b Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

HELICOBACTER PYLORI;

BACTERIAL PROTEIN; INORGANIC PYROPHOSPHATASE;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; GENE AMPLIFICATION; GENETICS; HELICOBACTER PYLORI; MOLECULAR GENETICS; PHYLOGENY; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; GENE AMPLIFICATION; HELICOBACTER PYLORI; INORGANIC PYROPHOSPHATASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT;

EID: 33644648891     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444905025667     Document Type: Article

References (29)

1. Avaeva, S., Kurilova, S., Nazarova, T., Rodina, E., Vorobyeva, N., Sklyankina, V., Grigorjeva, O., Harutyunyan, E., Oganessyan, V., Wilson, K., Dauter, Z., Huber, R. & Mather, T. (1997). FEBS Lett. 410, 502-508.
2. Baykov, A. A., Hyytia, T., Valk, S. E., Kasho, V. N., Vener, A. V., Goldman, A., Lahti, R. & Cooperman, B. S. (1996). Biochemistry, 35, 4655-4661.
3. Baykov, A. A., Shestakov, A. S., Pavlov, A. R., Smirnova, I. N., Larionov, V. N. & Avaeva, S. M. (1989). Biokhimiya, 54, 796-803.
4. Bond, M. W., Chiu, N. Y. & Cooperman, B. S. (1980). Biochemistry, 19, 94-102.
5. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, L. (1998). Acta Cryst. D54, 905-921.
6. Chen, J., Brevet, A., Formant, M., Leveque, F., Schmitter, J. M., Blanqust, S. & Plateau, P. (1990). J. Bacteriol. 172, 5686-5689.
7. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
8. Cooperman, B. S. (1982). Methods Enzymol. 87, 526-548.
9. Cowtan, K. & Main, P. (1998) Acta Cryst. D54, 487-493.
10. DeLano, W. L. (2002). The PyMOL Molecular Graphics System. http://www.pymol.org.
11. Heikinheimo, P., Lehtonen, J., Baykov, A., Lahti, R., Cooperman, B. S. & Goldman, A. (1996). Structure, 4, 1491-1508.
12. Kankare, J., Salminen, T., Lahti, R., Cooperman, B. S., Baykov, A. A. & Goldman, A. (1996). Biochemistry, 35, 4670-4677.
13. Knight, W. B., Dunaway-Mariano, D., Ranson, S. C. & Villafranca, J. J. (1984). J. Biol. Chem. 259, 2886-2895.
14. Leppanen, V. M., Nummelin, H., Hansen, T. & Lahti, R. (1999). Protein Sci. 8, 1218-1231.
15. Liu, B., Bartlam, M., Gao, R., Zhou, W., Pang, H., Liu, Y., Feng, Y. & Rao, Z. (2004). Biophys. J. 86, 420-427.
16. Lundin, M., Baltscheffsky, H. & Ronne, H. (1991). J. Biol. Chem. 266, 12168-12172.
17. Moiseev, V., Rodina, E. & Kurilova, S. A. (2004). Eur. J. Biochem. 271, Suppl. 1, 80 (Abstract P3.2-43).
18. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
19. Parfenyev, A. N., Salminen, A. N., Halonen, P., Hachimori, A., Baykov, A. A. & Lahti, R. (2001). J. Biol. Chem. 276, 24511-24518.
20. Ridlington, J. W., Yang, Y. & Butler, L. G. (1972). Arch. Biochem. Biophys. 153, 714-725.
21. Salminen, T., Kapyla, J., Heikinheimo, P., Kankare, J., Goldman, A., Heininen, J., Baykov, A. A., Cooperman, B. S. & Lahti, R. (1995). Biochemistry, 34, 782-791.
22. Shintani, T., Uchiumi, T., Yonezawa, T., Salminen, A., Baykov, A. A., Lahti, R. & Hachimori, A. (1998). FEBS Lett. 439, 263-266.
23. Sivula, T., Salmine, A., Parfenyev, A. N., Pohjanijoki, P., Goldman, A., Cooperman, B. S., Baykov, A. A. & Lahti, R. (1999). FEBS Lett. 454, 75-80.
24. Teplyakov, A., Obmolova, G., Wilson, K. S., Ishii, K., Kaji, H., Samejima, T. & Kuranova, I. (1994). Protein Sci. 3, 1098-1107.
25. Terwilliger, T. C. & Berendzen, J. (1999). Acta Cryst. D55, 849-861.
26. Terwilliger, T. C. & Berendzen, J. (2001). Acta Cryst. D57, 1755-1762.
27. Yeates, T. O. (1997). Methods Enzymol. 276, 344-358.
28. Young, T. W., Kuhn, N. J., Wadeson, A., Ward, S., Burges, D. & Cooke, G. D. (1998). Microbiology, 144, 2563-2571.
29. Yuzhen, Y. & Adam, G. (2004). Nucleic Acids Res. 32, 582-585.