Autonomous biomolecular computer modeled after retroviral replication

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 2943, Issue , 2004, Pages 203-212

  Nitta, Nao ^a   Suyama, Akira ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CLINICAL RESEARCH; DNA; DNA SEQUENCES; GENE EXPRESSION; RNA;

BIOMOLECULAR COMPUTERS; CLINICAL APPLICATION; DNA POLYMERASE; GENE ANALYSIS; GENE EXPRESSION PATTERNS; MULTIPLE FUNCTION; RETURN VALUE; TRANSCRIPTASE;

COMPUTER HARDWARE;

EID: 33544468174     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-24628-2_20     Document Type: Article

References (14)

1. Adleman, L.M.: Molecular computation of solutions to combinatorial problems. Science 266 (1994) 1021-1024
2. Lipton, R.J.: DNA solution of hard computational problems. Science 268 (1995) 542-545
3. Braich, R.S., Chelyapov, N., Johnson, C., Rothemund, P.W., Adleman, L.: Solution of a 20-variable 3-SAT problem on a DNA computer. Science 296 (2002) 499-502
4. Nakajima, T., Sakai, Y., Suyama, A.: Solving a 10-variable 43-clause instance of 3-SAT problems on DNA computer automatically executing a basic instruction set. Preliminary Proc. of The Eighth International Meeting on DNA Based Computers (2002) 332
5. Suyama, A., Nishida, N., Kurata, K., Omagari, K.: Gene expression analysis by DNA computing. Currents in Computational Molecular Biology 2000 (S. Miyano, R. Shamir, T. Takagi, Eds), Universal Academy Press, Inc., Tokyo, Japan (2000) 12-13
6. Nishida, N., Wakui, M., Tokunaga, K., Suyama, A.: Highly specific and quantitative gene expression profiling based on DNA computing. Genome Informatics 12 (2001) 259-260
7. Mills, A.P. Jr.: Gene expression profiling diagnosis through DNA molecular computation. Trends Biotechnol. 20 (2002) 137-140
8. Morimoto, N., Kiyohara, H., Sugimura, N., Karaki, S., Nakajima, T., Makino, T., Nishida, N., Suyama, A.: Automated processing system for gene expression profiling based on DNA computing technologies. Preliminary Proc. of The Eighth International Meeting on DNA Based Computers (2002) 331
9. Normile, D.: DNA-based computer takes aim at genes. Science 295 (2002) 951
10. Benenson, Y., Paz-Elizur, T., Adar, R., Keinan, E., Livneh, Z., Shapiro, E.: Programmable and autonomous computing machine made of biomolecules. Nature 414 (2001) 430-434
11. Guatelli, J.C., Whitfield, K.M., Kwoh, D.Y., Barringer, K.J., Richman, D.D., Gingeras, T.R.: Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication. Proc. Natl. Acad. Sci. USA. 87 (1990) 1874-1878
12. Ehricht, R., Kirner, T., Ellinger, T., Foerster, P., McCaskill, J.S.: Monitoring the amplification of CATCH, a 3SR based cooperatively, coupled isothermal amplification system, by fluorimetric methods. Nucleic Acids Res. 25 (1997) 4697-4699
13. Yoshida, H., Suyama, A.: Solution to 3-SAT by breadth first search. In DIMACS Series in Discrete Mathematics and Theoretical Computer Science, American Mathematical Society 54 (2000) 9-22
14. Wakui, M., Yamaguchi, A., Sakurai, D., Ogasawara, K., Yokochi, T., Tsuchiya, N., Ikeda, Y., Tokunaga, K.: Genes highly expressed in the early phase of murine graft-versus-host reaction. Biochem. Biophys. Res. Commun. 282 (2001) 200-206