Redox characterization of Geobacter sulfurreducens cytochrome c7 physiological relevance of the conserved residue F15 probed by site-specific mutagenesis

Biochemistry

Volumn 43, Issue 30, 2004, Pages 9909-9917

  Pessanha, Miguel ^a   Londer, Yuri Y ^b   Long, W Chris ^b   Erickson, Jill ^b   Rokkuluri, P Raj ^b   Schiffer, Marianne ^b   Salgueiroy, Carlos A ^a,c  

^a INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

^b ARGONNE NATIONAL LABORATORY   (United States)

^c UNIVERSIDADE NOVA DE LISBOA   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; MUTAGENESIS; OXIDATION; PH EFFECTS; PHYSIOLOGY; SPECTROSCOPIC ANALYSIS;

CYTOCHROMES; MUTANTS;

PROTEINS;

BACTERIAL PROTEIN; CYTOCHROME C; CYTOCHROME C7; HEME DERIVATIVE; METAL ION; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENOME; CRYSTAL STRUCTURE; DESULFUROMONAS ACETOXIDANS; ELECTRON TRANSPORT; GENE SEQUENCE; GEOBACTER SULFURREDUCENS; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; OXIDATION; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN FOLDING; REDUCTION; SITE DIRECTED MUTAGENESIS; SPECTROSCOPY;

AMINO ACID SUBSTITUTION; BACTERIAL PROTEINS; CONSERVED SEQUENCE; CYTOCHROME C GROUP; DESULFUROMONAS; GEOBACTER; HEME; HYDROGEN-ION CONCENTRATION; MUTAGENESIS, SITE-DIRECTED; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OXIDATION-REDUCTION; PHENYLALANINE; PROTONS; SPECTROPHOTOMETRY, ULTRAVIOLET; THERMODYNAMICS; TYROSINE;

BACTERIA (MICROORGANISMS); DESULFUROMONAS; DESULFUROMONAS ACETOXIDANS; GEOBACTER; GEOBACTER SULFURREDUCENS; NEGIBACTERIA; PROTEOBACTERIA; UNCULTURED DELTA PROTEOBACTERIUM;

EID: 3342967677     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0492859     Document Type: Article

References (45)

1. Methé, B. A., Nelson, K. E., Eisen, J. A., Paulsen, I. T., Nelson, W., Heidelberg, J. F., Wu, D., Wu, M., Ward, N., Beanan, M. J., Dodson, R. J., Madupu, R., Brinkac, L. M., Daugherty, S. C., DeBoy, R. T., Durkin, A. S., Gwinn, M., Kolonay, J. F., Sullivan, S. A., Haft, D. H., Selengut, J., Davidsen, T. M., Zafar, N., White, O., Tran, B., Romero, C., Forberger, H. A., Weidman, J., Khouri, H., Feldblyum, T. V., Utterback, T. R., Van Aken, S. E., Lovley, D. R., and Fraser, C. M. (2003) Genome of Geobacter sulfurreducens: metal reduction in subsurface environments, Science 302, 1967-1969.
2. Lovley, D. R. (2000) Fe(III) and Mn(IV) reduction, in Environmental microbe-metal interactions (Lovley, D. R., Ed.) pp 3-30, ASM Press, Washington, DC.
3. Lovley, D. R. (2001) Reduction of iron and humics in subsurface environments, in Subsurface microbiology and biogeochemistry (Fredrickson, J. K. F., and Fletcher, M., Ed.) pp 193-217, Wiley-Liss, Inc., New York,
4. Lovley, D. R., and Coates, J. D. (2000) Novel forms of anaerobic respiration of environmental relevance, Curr. Opin. Microbiol. 3, 252-256.
5. Lovley, D. R., Baedecker, M. J., Lonergan, D. J., Cozzarelli, I. M., Phillips, E. J., and Siegel, D. I. (1989) Oxidation of aromatic contaminants coupled to microbial reduction, Nature 339, 297-299.
6. Rooney-Varga, J. N., Anderson, R. T., Fraga, J. L., Ringelberg, D., and Lovley, D. R. (1999) Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer, Appl. Environ. Microbiol. 65, 3056-3063.
7. Snoeyenbos-West, O. L., Nevin, K. P., Anderson, R. T., and Lovley, D. R. (2000) Enrichment of Geobacter Species in Response to Stimulation of Fe(III) Reduction in Sandy Aquifer Sediments, Microb. Ecol. 39, 153-167.
8. Gaspard, S., Vazquez, F., and Holliger, C. (1998) Localization and solubilization of the Iron(III) reductase of Geobacter sulfurreducens, Appl. Environ. Microbiol. 64, 3188-3194.
9. Leang, C., Coppi, M. V., and Lovley, D. R. (2003) OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens, J. Bacteriol. 185, 2096-2103.
10. Lloyd, J. R., Blunt-Harris, E. L., and Lovley, D. R. (1999) The periplasmic 9.6-kilodalton c-type cytochrome of Geobacter sulfurreducens is not an electron shuttle to Fe(III), J. Bacteriol. 181, 7647-7649.
11. Lloyd, J. R., Leang, C., Hodges Myerson, A. L., Coppi, M. V., Cuifo, S., Methe, M., Sandler, S. J., and Lovley, D. R. (2003) Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens, Biochem. J. 369, 153-161.
12. Magnuson, T. S., Isoyama, N., Hodges-Myerson, A. L., Davidson, G., Maroney, M. J., Geesey, G. G., and Lovley, D. R. (2001) Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens, Biochem. J. 359, 147-52.
13. Seeliger, S., Cord-Ruwisch, R., and Schink, B. (1998) A periplasmic and extracellular c-type cytochrome of Geobacter sulfurreducens acts as a ferric iron reductase and as an electron carrier to other acceptors or to partner bacteria, J. Bacteriol. 180, 3686-3691.
14. 7 from the metal-reducing bacterium, Geobacter metallireducens, FEMS Microbiol. Lett. 175, 205-210.
15. 7 from Geobacter sulfurreducens in Escherichia coli, Biochim. Biophys. Acta 1554, 202-211.
16. 7 at 1.45 Å resolution, Biochemistry 43, 849-859.
17. 1H NMR, J. Biol. Inorg. Chem. 1, 305-311.
18. 3 from Desulfuromonas acetoxidans, Eur. J. Biochem. 243, 474-481.
19. 3 from Desulfuromonas acetoxidans, Eur. J. Biochem. 269, 5722-5730.
20. Pfennig, N., and Biebl, H. (1976) Desulfuromonas acetoxidans gen. nov. and sp. nov., a new anaerobic, sulfur-reducing, acetate-oxidizing bacterium, Arch. Microbiol. 110, 3-12.
21. Brugna, M., Nitschke, W., Toci, R., Bruschi, M., and Giudici-Orticoni, M. T. (1999) First evidence for the presence of a hydrogenase in the sulfur-reducing bacterium Desulfuromonas acetoxidans, J. Bacteriol. 181, 5505-5508.
22. 7 from Desulfuromonas acetoxidans at 1.9 Å resolution, Acta Crystallogr. D57, 670-678.
23. 3 from Desulfovibrio gigas at 1.2 Å resolution, Acta Crystallogr. D59, 644-653.
24. 7-type three-heme cytochrome domain from a multidomain cytochrome c polymer, Protein Sci. 13, 1684-1692.
25. 3: the importance of mechano-chemical coupling for energy transduction, ChemBioChem 2, 831-837.
26. Dutton, P. L. (1978) Redox potentiometry: determination of midpoint potentials of oxidation-reduction components of biological electron-transfer systems, Methods Enzymol. 54, 411-435.
27. 3 from Desulfovibrio desulfuricans Norway, Eur. J. Biochem, 177, 199-206.
28. 3 from Desulfovibrio desulfuricans NCIMB 8372, Effects of electrode materials and sodium chloride, J. Electroanal. Chem. 318, 291-307.
29. 3 from D. vulgaris Miyazaki F, Biochim. Biophys. Acta 1293, 45-54.
30. Rothery, E. L., Mowat, C. G., Miles, C. S., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2003) Histidine 61: an important heme ligand in the soluble fumarate reductase from Shewanella frigidimarina, Biochemistry 42, 13160-13169.
31. 3, Biochem. J. 370, 489-495.
32. 3 from Desulfovibrio vulgaris, Eur. J. Biochem. 241, 723-731.
33. 3 by 2D-NMR, FEBS Lett. 314, 155-158.
34. 3, Eur. J. Biochem. 141, 283-296.
35. Turner, D. L., Salgueiro, C. A., Schenkels, P., LeGall, J., and Xavier, A. V. (1995) Carbon-13 NMR studies of the influence of axial ligand orientation on haem electronic structure, Biochim. Biophys. Acta 1246, 24-28.
36. 3 regulating the electron-transfer rate, Biophys. J. 3, 1483-1490,
37. Louro, R. O., Catarino, T., Turner, D. L., Picarra-Pereira, M. A., Pacheco, I., LeGall, J., and Xavier, A. V. (1998) Functional and mechanistic studies of cytochrome c3 from Desulfovibrio gigas: thermodynamics of a "proton thruster", Biochemistry 37, 15808-15815.
38. Xavier, A. V. (1986) Energy transduction coupling mechanisms in multiredox center proteins, J. Inorg. Biochem. 28, 239-243.
39. Xavier, A. V. (2002) A mechano-chemical model for energy transduction in cytochrome c oxidase: the work of a Maxwell's god, FEBS Lett. 532, 261-266.
40. Saraiva, L. M., Salgueiro, C. A., LeGall, J., van Dougen, W. M. A. M., and Xavier, A. V. (1996) Site-directed mutagenesis of a phenylalanine residue strictly conserved in cytochromes c3, J. Biol. Inorg. Chem. 1, 542-550.
41. Dolla, A., Arnoux, P., Protasevich, I., Lobachov, V., Brugna, M., Giudici-Orticoni, M. T., Haser, R., Czjzek, M., Makarov, A., and Bruschi, M. (1999) Key role of phenylalanine 20 in cytochrome c3: structure, stability, and function studies, Biochemistry 38, 33-41.
42. 1H-nuclear-magnetic-resonance spectroscopy, Biochem. J. 294, 909-915.
43. 3: structural basis for functional cooperativity, J. Mol. Biol. 281, 719-739.
44. 3 by two-dimensional NMR, Eur. J. Biochem. 210, 931-936.
45. Moss, G. P. (1988) IUPAC-IUB Joint Comission on Biochemical Nomenclature (JCBN), Eur. J. Biochem. 178, 277-328.