Multi-model simulations of chicken limb morphogenesis

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 2659, Issue , 2003, Pages 39-49

  Chaturvedi, R ^a   Izaguirre, J A ^a   Huang, C ^a   Cickovski, T ^a   Virtue, P ^a   Thomas, G ^b   Forgacs, G ^c   Alber, M ^b   Hentschel, G ^d   Newman, S A ^e   Glazier, J A ^f  

^a University of Notre Dame   (United States)

^b UNIVERSITY OF NOTRE DAME   (United States)

^c UNIVERSITY OF MISSOURI   (United States)

^d EMORY UNIVERSITY   (United States)

^e NEW YORK MEDICAL COLLEGE   (United States)

^f INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CELL ADHESION; CELLS; COMPLEX NETWORKS; COMPUTER PROGRAMMING; CYTOLOGY; GENE EXPRESSION; MORPHOLOGY; ORDINARY DIFFERENTIAL EQUATIONS;

CELL PATTERN FORMATION; CELLULAR MECHANISMS; CELLULAR POTTS MODELS; EXTRACELLULAR MATRIX INTERACTIONS; GENETIC REGULATORY NETWORKS; INTEGRATED FRAMEWORKS; MULTI-MODEL SIMULATIONS; MULTICELLULAR ORGANISMS;

POTTS MODEL;

EID: 33244487114     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3-540-44863-2_5     Document Type: Article

References (18)

1. Mjolsness, E., Sharp, D. H. & Reinitz, J. (1991) A connectionist model of development. J. Theor. Biol., 152, 429-453.
2. Davidson, E., Rast, J. P., Oliveri, P., Ransick, A., Calestani, C., Yuh, C., Minokawa, T., Amore, G., Hinman, V., C. Arenas-Mena, Otim, O., Brown, C., Livi, C., Lee, P., Revilla, R., Rust, A., Pan, Z., Schilstra, M., Clarke, P., Amone, M., Rowen, L., Cameron, R., McClay, D., Hood, L. & Bolouri, H. (2002) A genomic regulatory network for development. Science, 295, 1669.
3. Marée, F. M. & Hogeweg, P. (2001) How amoeboids self-organize into a fruiting body: multicellular coordination in Dictyostelium discoideum. Proc. Natl. Acad. Sci. USA, 98, 3879-3883.
4. Newman, S. A. & Comper, W. (1990) Generic physical mechanisms of morphogenesis and pattern formation. Development, 110, 1-18.
5. Lewis, J. (1975) Fate maps and the pattern of cell division: a calculation for the chick wing-bud. J. Embryol. exp. Morph., 33 , 419-434.
6. Newman, S. A. (1996) Sticky fingers: Hox genes and cell adhesion in vertebrate limb development. BioEssays, 18, 171-174.
7. Downie, S. & Newman, S. (1995) Different roles for fibronectin in the generation of fore and hind limb precartilage condensations. Dev. Biol., 172, 519-530.
8. Oberlender, S. & Tuan, R. (1994) Expression and functional involvement of N-cadherin in embryonic limb chondrogenesis. Development, 120, 177-187.
9. Steinberg, M. S. (1978). Specific cell ligands and the differential adhesion hypothesis: How do they fit together? In Specificity of Embryological Interactions (D. R. Garrod, Ed.), pp. 97-130. London: Chapman and Hall.
10. Graner, F. & Glazier, J. A. (1992) Simulation of biological cell sorting using a two-dimensional extended Potts model. Phys. Rev. Lett., 69, 2013-2016.
11. Jong, H. D. (2002) Modeling and simulation of genetic regulatory systems: a literature review. J. Comp. Biol., 9, 67-103.
12. Turing, A. (1952) The chemical basis of morphogenesis. Phil. Trans. Roy. Soc. London, B 237, 37-72.
13. Newman, S. A. & Frisch, H. L. (1979) Dynamics of skeletal pattern formation in developing chick limb. Science, 205, 662-668.
14. Meinhardt, H., and Gierer, A. (2000) Pattern formation by local self-activation and lateral inhibition. Bioessays 22, 753-760.
15. Mombach, J. & Glazier, J. (1996) Single cell motion in aggregates of embryonic cells. Phys. Rev. Lett., 76, 3032-3035.
16. Marée, S. (2000) From Pattern Formation to Morphogenesis. PhD thesis, Utrecht University Netherlands.
17. Drasdo, D. & Forgacs, G. (2000) Interplay of generic and genetic mechanisms in early development. Developmental Dynamics, 219, 182-191.
18. Murray, J. D. (1993) Mathematical Biology, Second Corrected Edition (Biomathematics Vol. 19), Springer-Verlag, Berlin Heidelberg, pp. 156, 376, 406, 472, 739.