Microbacterium koreense sp. nov., from sea water in the South Sea of Korea

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 2, 2006, Pages 423-427

  Lee, Jung Sook ^a   Lee, Keun Chul ^a   Park, Yong Ha ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; DIAMINO ACID; FATTY ACID; GALACTOSE; GUANINE; LYSINE; QUINONE DERIVATIVE; RNA 16S; SEA WATER; XYLOSE;

ARTICLE; BACTERIAL CELL; BACTERIAL CELL WALL; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA CONTENT; DNA DNA HYBRIDIZATION; GRAM POSITIVE BACTERIUM; KOREA; MICROBACTERIUM KOREENSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; KOREA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OCEANS AND SEAS; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); MICROBACTERIUM; MICROBACTERIUM AURUM; MICROBACTERIUM LACTICUM; MICROBACTERIUM SCHLEIFERI; MICROBACTERIUM TERREGENS; POSIBACTERIA;

EID: 33244454740     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63854-0     Document Type: Article

References (25)

1. Behrendt, U., Ulrich, A. & Schumann, P. (2001). Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterrium resistens comb. nov. Int J Syst Evol Microbiol 51, 1267-1276.
2. Bousfield, I. J., Keddie, R. M., Dando, T. R. & Shaw, S. (1985). Simple rapid methods of cell wall analysis as an aid in the identification of aerobic coryneform bacteria. In Chemical Methods in Bacterial Systematics, vol. 20, pp. 221-236. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
3. Collins, M. D., Jones, D., Keddie, R. M., Kroppenstedt, R. M. & Schleifer, K. H. (1983). Classification of some coryneform bacteria in a new genus Aureobacterium. Syst Appl Microbiol 4, 236-252.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
7. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
8. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 201-203.
9. Lee, J.-S., Jung, M.-C., Kim, W.-S. & 10 other authors (1996). Identification of lactic acid bacteria from kimchi by cellular FAMEs analysis. Korean J Appl Microbiol Biotechnol 24, 234-241.
10. Marmur, J. (1961). A procedure for the isolation of DNA from microorganisms. J Mol Biol 3, 208-218.
11. Orla-Jensen, S. (1919). The Lactic Acid Bacteria. Copenhagen: Host & Sons.
12. Rossello-Mora, R. & Amann, R. (2001). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39-67.
13. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
14. T. J Microbiol Biotechnol 6, 68-69.
15. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
16. Stackebrandt, E & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
17. Stackebrandt, E & Liesack, W. (1993). Nucleic acids and classification. In Handbook of New Bacterial Systematics, pp. 152-189. Edited by M. Goodfellow & A. G. O'Donnell. London: Academic Press.
18. Stackebrandt, E, Frederiksen, W., Garrity, G. M. & 10 other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
19. Takeuchi, M. & Hatano, K. (1998a). Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48, 739-747.
20. Takeuchi, M. & Hatano, K. (1998b). Proposal of six new species in the genus Microbacterium and transfer of Flavobacterium marinotypicum ZoBell and Upham to the genus Microbacterium as Microbacterium maritypicum comb. nov. Int J Syst Bacteriol 48, 973-982.
21. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed phase high-performance liquid chromatography. FEMS Microbiol 25, 125-128.
22. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). cLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
23. Wayne, L G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches of bacterial systematics. Int J Syst Bacteriol 37, 463-464.
24. Yang, P., Vauterin, L, Vancaneyt, M., Swings, J. & Kersters, K. (1993). Application of fatty acid methyl esters for the taxonomic analysis of the genus Xanthomonas. Syst Appl Microbiol 16, 47-71.
25. Yumoto, L, Yamazaki, K., Sawabe, T., Nakano, K., Kawasaki, K., Ezura, Y. & Shinano, H. (1998). Bacillus horti sp. nov., a new Gram-negative alkaliphilic bacillus. Int J Syst Bacteriol 48, 565-571.