Fluorescent in situ hybridization (FISH) for the detection of bacterial community in activated sludge from textile factories

Environmental Technology

Volumn 27, Issue 1, 2006, Pages 63-69

  Aktan, S ^a   Salih, B A ^a  

^a FATIH UNIVERSITY   (Turkey)

Author keywords

Activated sludge; Fluorescent in situ hybridization (FISH)

Indexed keywords

BACTERIA; BIODEGRADATION; FLUORESCENCE; RNA; TEXTILE INDUSTRY; TEXTILES;

ACTIVATED SLUDGE; BACTERIAL COMMUNITY STRUCTURE; BACTERIAL POPULATION; COMPREHENSIVE INFORMATION; CONVENTIONAL METHODS; FLUORESCENT IN SITU HYBRIDIZATION; OPERATIONAL EFFICIENCIES; PHASE-CONTRAST MICROSCOPY;

FISH;

ACTIVATED SLUDGE PROCESS; BACTERIA; BIODEGRADATION; COMPOSITION; INDUSTRIAL WATER TREATMENT; TEXTILE PROCESSING; WASTEWATER TREATMENT;

ACTIVATED SLUDGE; BACTERIUM; BIODEGRADATION; MICROBIAL COMMUNITY;

ACTIVATED SLUDGE; ARTICLE; BACTERIAL COUNT; BACTERIAL FLORA; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BIODEGRADATION; COMMUNITY STRUCTURE; FLAVOBACTERIUM; FLUORESCENCE IN SITU HYBRIDIZATION; GRAM POSITIVE BACTERIUM; INDUSTRIAL WASTE; METHODOLOGY; NONHUMAN; PHASE CONTRAST MICROSCOPY; PROTEOBACTERIA; RNA PROBE; TEXTILE INDUSTRY;

BACTERIA (MICROORGANISMS); CYTOPHAGA; FLAVOBACTERIUM; POSIBACTERIA; PROTEOBACTERIA;

EID: 33144482948     PISSN: 09593330     EISSN: None     Source Type: Journal    
DOI: 10.1080/09593332708618615     Document Type: Article

References (18)

1. Kampfer P., Erhart R., Beimfohr C., Bohringer J., Wagner M. and Amann R., Characterization of bacterial communities from activated sludge: Culture-dependant numerical identification versus in situ identification using group- and genus-specific rRNA-targeted oligonucleotide probes. Microb. Ecol., 32, 101-121 (1996).
2. Wagner M., Lay A., Nagueira R., Purkhald U., Lee N. and Daims H., Microbial community composition and function in wastewater treatment plants. Antonie Van Leeuwenhoek, 81, 665-680 (2002).
3. Moter A. and Gobel U.B., Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. J. Microbiol. Methods, 41, 85-112 (2000).
4. Mudaly D.D., Atkinson B.W. and Bux F., 16S rRNA in situ probing for the determination of the family level community structure implicated in enhanced biological nutrient removal. Water Sci. Technol., 43, 91-98 (2001).
5. Mobarry B.K., Wagner M., Urbain V., Rittmann B.E. and Stahl D.A., Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl. Environ. Microbiol., 62, 2156-2162 (1996).
6. Juretschko S., Loy A., Lehner A. and Wagner M., The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. System. Appl. Microbiol., 25, 84-99 (2002).
7. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R. and Stahl D.A., Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol., 56, 1919-1925 (1990).
8. Snaidr J., Amann R., Huber I., Ludwig W. and Schleifer K.H., Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl. Environ. Microbiol., 63, 2884-2896 (1997).
9. Rice E.W., Microbiological examinations. In: Standard Methods for the Examination of Water and Wastewater. Clesceri L.S., Greenberg A.E. and Eaton A.D. (eds.). American Public Health Association. Washington, D.C. pp. 9, 41-9 42 (1998).
10. Wagner M., Assmus B., Hartmann A., Hutzler P. and Amann R., In situ analysis of microbial consortia in activated sludge using fluorescently labeled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy. J. Microbiol., 176, 181-187 (1994).
11. Wagner M., Amann R., Lemmer H. and Schleifer K.H., Probing activated sludge with oligonucleoticles specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure, Appl. Environ. Microbiol., 59, 1520-1525 (1993).
12. Wallner G., Erhart R. and Amann R., Flow cytometric analysis of activated sludge with rRNA-targeted probes. Appl. Environ. Microbiol., 61, 1859-1866 (1995).
13. Manz W., Wagner M. Amann R. and Schleifer K.H., In situ characterization of the microbial consortia active in two wastewater treatment plants. Water Res., 28, 1715-1723 (1994).
14. Whiteley A.S. and Bailey M.J., Bacterial community structure and physiological state within an industrial phenol bioremediation system. Appl. Environ. Microbiol., 66, 2400-2407 (2000).
15. LaPara T.M., Nakatsu C.H., Pantea L. and Alleman J.E., Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl. Environ. Microbiol., 66, 3951-3959 (2000).
16. Kanagawa T., Kamagata Y., Aruga S., Kohno T., Horn M. and Wagner M., Phylogenetic analysis of and oligonucleotide probe development for eikelboom type 021N filamentous bacteria isolated from bulking activated sludge. Appl. Environ. Microbiol., 66, 5043-5052 (2000).
17. Wagner M. and Loy A., Bacterial community composition and function in sewage treatment systems. Current Opin. Biotechnol., 13, 218-227 (2002b).
18. Elkelboom D.H. and Geurkink B., Filamentous microorganisms observed in industrial activated sludge plants. Water Sci. Technol., 46, 535-542 (2002).