Bacterial community changes with N′-N′ dimethylforamide (DMF) additives during polycyclic aromatic hydrocarbons (PAH) biodegardation

Environmental Technology

Volumn 27, Issue 1, 2006, Pages 1-14

  Chang, Y T ^a,b   Lee, J F ^a   Liao, W L ^c  

^a NATIONAL CENTRAL UNIVERSITY   (Taiwan)

^b TUNG NAN INSTITUTE OF TECHNOLOGY   (Taiwan)

^c RSEA Engineering Corporation   (Taiwan)

Author keywords

Community level physiological profiling (CLPP); Fluorescence in situ hybridization (FISH), BioLog system; N N dimethyl formamide (DMF); Polycyclic aromatic hydrocarbons (PAHs)

Indexed keywords

ADDITIVES; AROMATIZATION; BACTERIA; BIODEGRADATION; BIODIVERSITY; DIMETHYLFORMAMIDE; FISH; FLUORESCENCE; FLUORESCENCE MICROSCOPY; MINERAL OILS; ORGANIC SOLVENTS; PETROLEUM ADDITIVES; PHYSIOLOGY;

BIOLOG SYSTEMS; COMMUNITY LEVEL PHYSIOLOGICAL PROFILING; FLUORESCENCE IN SITU HYBRIDIZATION; GRAM-POSITIVE BACTERIUM; LOW-G+C GRAM-POSITIVE BACTERIUM; MICROBIAL POPULATIONS; POLYCYCLIC AROMATIC HYDROCARBON (PAH); POLYCYCLIC AROMATIC HYDROCARBONS (PAHS);

POLYCYCLIC AROMATIC HYDROCARBONS;

CARBON; N,N DIMETHYLFORMAMIDE; POLYCYCLIC AROMATIC HYDROCARBON DERIVATIVE;

ADDITIVES; BIODEGRADATION; BIODIVERSITY; COMPOSITION EFFECTS; MICROBIOLOGY; MICROORGANISMS; NITROGEN COMPOUNDS; POLYCYCLIC AROMATIC HYDROCARBONS;

BACTERIUM; BIODEGRADATION; DIMETHYLSULFIDE; MICROBIAL COMMUNITY; PAH;

ALPHAPROTEOBACTERIA; ARCHAEBACTERIUM; ARTICLE; BACTERIAL FLORA; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BETAPROTEOBACTERIA; BIODEGRADABILITY; BIODIVERSITY; CARBON SOURCE; CARBON UTILIZATION; ENZYME ACTIVITY; FLUORESCENCE IN SITU HYBRIDIZATION; GAMMAPROTEOBACTERIA; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; MICROBIAL DEGRADATION; MICROBIAL GROWTH; MICROBIAL POPULATION DYNAMICS; MICROTITER PLATE ASSAY; NONHUMAN; OPTICAL DENSITY; PSEUDOMONADACEAE; WASTE COMPONENT REMOVAL;

ACTINOBACTERIA (CLASS); ALPHAPROTEOBACTERIA; ARCHAEA; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; DEINOCOCCUS-THERMUS; FIRMICUTES; GAMMAPROTEOBACTERIA; NEGIBACTERIA; POSIBACTERIA; PSEUDOMONADACEAE;

EID: 33144475426     PISSN: 09593330     EISSN: None     Source Type: Journal    
DOI: 10.1080/09593332708618613     Document Type: Article

References (41)

1. Harayama S., Polycyclic aromatic hydrocarbon bioremediation design. Environ. Biotechnol., 8, 268-273 (1997).
2. Hughes J.B., Beckles D.M., Chandar S.B. and Ward C.H., Utilization of bioremediation process for the treatment of PAH-contaminated sediments. J. Ind. Microbiol. Biotechnol., 18, 152-162 (1997).
3. McNally D.L., Mihelcic J.R. and Lueking D.R., Biodegradation of three- and four-Ring polycyclic aromatic hydrocarbons under aerobic and denitrifying conditions. Environ. Sci. Technol., 32, 2633-2639 (1998).
4. Boonchan S., Britz. M.L. and Stanley G.A., Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Appl. Environ. Microbiol., 66, 1007-1079 (2000).
5. Juhasz A.L., Stanley G.A., and Britz M.L., Microbial degradation and detoxification of high molecular weight polycyclic aromatic hydrocarbons by Stenotrophomonas maltophilia strain VUN 10003. Lett. Appl. Microbiol., 30, 396 (2000).
6. Moody J.D., Freeman J.P., Doerge D.R., and Cerniglia C.E., Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1. Appl. Environ. Microbiol., 67, 1476-1483 (2001)
7. Bogan B.W., Lahner L.M., Trbovic V., Szajkovics A.M., and Paterek J.R., Effects of alkylphosphates and nitrous oxide on microbial degradation of polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol., 67, 2139-2144 (2001).
8. Keith B., Brown R.S and Luong J.H.T., Enzymatic oxidation of water-soluble cyclodextrin-polynuclear aromatic hydrocarbon inclusion complexes, using lignin peroxidase. Enzyme Microbiol. Technol., 17, 607-614 (1995).
9. Pickard M.A., Roman R., Tinoco R. and Vazquez-Duhalt R., Polycyclic aromatic hydrocarbon metabolisms by white rot fungi and oxidation by Coriolopsis gallica UAMH 8260 Laccase, Appl. Environ. Microbiol., 65, 3805-3809 (1999).
10. Steffen K.T., Hatakka A. and Hofrichter M. Degradation of benzo[a]pyrene by the litter-decomposing basidiomycete Stropharia coronilla: role of manganese peroxidase, Appl. Environ. Microbiol., 69, 3957-3964 (2003).
11. Selifonova O., Valle F. and Schellenberger V., Rapid evolution of novel traits in microorganisms. Appl. Environ. Microbiol., 67, 3645-3649 (2001).
12. Brinch U.C., Ekelund F. and Jacobsen C.S., Method for spiking soil samples with organics compounds. Appl. Environ. Microbiol., 68, 1808-1816 (2002).
13. Field J.A., Boelsma F., Baten H. and Rulkens W.H., Oxidation of anthracene in water/solvent mixtures by the white-rot fungus, Bjerkandera sp. strain BOS55, Appl. Microbiol. Biotechnol., 44, 234-240 (1995)
14. Ramos J.L., Duque E., Rodríguez-Herva J.-J., Godoy P., Haïdour A., Reyes F. and Fernández-Barrero A., Mechanisms for solvent tolerance in bacteria. J. Biol. Chem., 272, 3887-3890 (1997).
15. MacLeod C.T. and Daugulis A.J., Biodegradation of polycyclic aromatic hydrocarbons in a two-phase partitioning bioreactor in the presence of a bioavailable solvent. Appl. Microbiol. Biotechnol., 62, 291-296 (2003).
16. Mihelcic J.R., McNally D.L. and Lueking D.R., Surfactant-enhanced remediation of subsurface contaminants: emerging technologies, Sabatini D.A., Knox, R.C. and Harwell, J.H. (eds.), ACS Symposium Series 594; American Chemical Society: Washington, DC, pp. 112 (1995).
17. Urakami T., Kobayashi H. and Araki H., Isolation and identification of N, N-dimethylformmide-biodegrading bacteria, J. Ferment. Bioeng., 70, 45-47 (1990).
18. Hu H., Fujie K., Tanaka H., Makabe T. and Urano K., Respiratory quinone profile as a tool for refractory chemical biodegradation study. Water Sci. Technol., 35, 103-110 (1997).
19. Stanier R.Y., Palleroni N.J. and Douderoff M., The aerobic pseudomonades: a taxonomic study, J. Gen. Microbiol., 53, 1010-1019 (1996).
20. Shuttleworth K.L. and Cerniglia C.E., Practical methods for the isolation of polycyclic aromatic hydrocarbon (PAH) microorganisms and determination of PAH mineralization and biodegradation intermediates. In: Manual of Environmental Microbiology, Hurst, C.J., Knudsen G.R., McInerney M.J., Stetzenbach L.D., Walter M.V. (eds.), American Society for Microbiology Press, Washington D.C., U.S.A. (1997).
21. Prescott M.L., Harley J.P. and Klein D.A., Microbiology. 6th edition, McGraw-Hill, New York, U.S.A. (2005).
22. Manz W., Amann R., Ludwig W., Wagner M. and Schleifer K.-H., Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol., 15, 593-600 (1992).
23. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R. and Stahl D.A., Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol., 36, 1919-1925 (1990).
24. Roller C., Wagner M., Amann R., Ludwig W. and Schleifer K.-H., In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA- targeted oligonucleotides. Microbiol., 140, 2849-2858 (1994).
25. Meier H., Amann R., Ludwig W. and Schleifer K.-H., Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content. Syst. Appl. Microbiol., 22, 186-196 (1999).
26. Brosius J., Dull T.J., Sleeter D.D. and Noller H.F., Gene organization and primary structure of a ribosomal RNA opern from Esherichia coli. J. Mol. Biol. 148, 107-127 (1981).
27. Bochner B.R., The biolog microstation system and general procedures for identifying environmental bacteria and yeast. In: Automated Microbial Identification and Quantitation: Technologies for the 2000s, W.P. Olson, (ed.), Interpharm Press, 13-51 (1996).
28. Lee C., Russell N.J. and White G.F., Rapid screening for bacterial phenotypes capable of biodegrading anionic surfactants: development and validation of a microtitre plate method. Microbiol., 141, 2801-2810 (1995).
29. Dianese A.C., Ji P. and Wilson M., Nutritional similarity between leaf-associated nonpathogenic bacteria and the pathogen is not predictive of efficacy in biological control of bacterial spot of tomato. Appl. Environ. Microbiol., 69, 3484-3491 (2003).
30. Garrity, G.M., Boone, D.R. and Castenholz, R.W. (Eds.), Bergey's Manual of Systematic Bacteriology Volume 1: the Archaea and the Deeply Branching and Phototrophic Bacteria, 2nd edition, Springer, (2001).
31. Rogers S.W., Ong S.K., Kjartanson B.H., Golchin J. and Stenback G.A., Natural attenuation of polycyclic aromatic hydrocarbon-contaminated sites: review. ASCE Practice Periodical of Hazardous, Toxic, and Radioactive Waste Management, 3, 141-155 (2002).
32. Garland J.L., Analysis and interpretation of community-level physiological profiles in microbial ecology. FEMS Microbiol. Ecol., 24, 289-300 (1997).
33. Verschuere L., Fievez V., Vooren L.V. and Verstraete W., The contribution of individual populations to the Biolog pattern of model microbial community. FEMS Microbiol. Ecol., 24, 353-362 (1997).
34. Garland J.L. and Mills A.L., Classification and characterization of the heterotrophic microbial communities on the basis of pattern of community-level sole-carbon-source utilization. Appl. Environ. Microbiol., 57, 2351-2359 (1991).
35. Poh, C.L. and Loh G.K., Enzymatic characterization of Pseudomonas cepacia by API ZYM profile. J. Clin. Microbiol., 26, 607-608 (1988).
36. Cerniglia C.E. and Heitkamp M.A., Microbial degradation of PAH in the aquatic environment. In: Metabolism of Polycyclic Aromatic Hydrocarbons in the Environment, Varanasi U. (eds.), CRC Press, Inc. Boca Raton, Fl., USA. (1989)
37. Smith M.R., The physiology of aromatic hydrocarbon degrading bacteria, biochemistry of microbial degradation, In: Biochemistry of Microbial Degradation, Ratledge, C. (ed.), Kluwer Academic Publishers, Dordrecht, The Netherlands (1994).
38. Breedveld G.D. and Karlsen D.A., Estimating the availability of polycyclic aromatic hydrocarbons for bioremediation of creosote contaminated soils. Appl. Microbiol. Biotechnol. 54, 255-261 (2000).
39. Madigan M.T., Martinko J.M. and Parker J., Brock Biology of Microbiology, 10th edition, Pearson Education LTD., London, U.K. (2003).
40. Bakermans C., Hohnstock-Ashe A.M., Padmanabhan S., Padmanabhan P. and Madsen E.L., Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar wastes by subsurface microorganisms. Microbial. Ecol., 44, 107-117 (2002).
41. Schär H.-P., Holzmann W., Ramos Tombo G.M. and Ghisalba O., Purification and characterization of N,N-dimethylformamidase from Pseudomonas DMF 3/3. Eur. J. Biochem., 158, 469-475 (1986).