Circular dichroism and cross-linking studies of bacteriorhodopsin mutants

Amino Acids

Volumn 30, Issue 1, 2006, Pages 17-23

  Karnaukhova, E ^a,c   Schey, K L ^b   Crouch, R K ^b  

^a CENTER FOR BIOLOGICS EVALUATION AND RESEARCH   (United States)

^b MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

Bacteriorhodopsin; Circular dichroism; Cross linking; Matrix assisted laser desorption ionization mass spectrometry; Mutants

Indexed keywords

BACTERIORHODOPSIN; DETERGENT;

AMINO ACID SUBSTITUTION; ARTICLE; CIRCULAR DICHROISM; CRYSTAL STRUCTURE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CROSS LINKING; SOLUBILIZATION; STATISTICAL SIGNIFICANCE; STRUCTURE ANALYSIS; WILD TYPE;

AMINO ACID SUBSTITUTION; BACTERIORHODOPSINS; CIRCULAR DICHROISM; CROSS-LINKING REAGENTS; HALOBACTERIUM SALINARUM; MUTAGENESIS, SITE-DIRECTED; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 32944467705     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-005-0255-0     Document Type: Article

References (49)

1. HG Baumert H Fasold 1989 Cross-linking techniques. Methods Enzymol 172 584 589
2. B Becher JY Cassim 1975 Improved isolation procedures for the purple membrane of Halobacterium halobium. Prep Biochem 5 161 178
3. B Becher JY Cassim 1977 Effects of bleaching and regeneration on the purple membrane structure of Halobacterium halobium. Biophys J 19 285 297
4. B Becher TG Ebrey 1976 Evidence for chromophore-chromophore (exciton) interaction in the purple membrane of Halobacterium halobium. Biochem Biophys Res Commun 69 1 6
5. * states. J Chem Phys 92 7178 7196
6. CG Brouilette DD Muccio TK Finney 1987 pH dependence of bacteriorhodopsin thermal unfolding. Biochemistry 26 7431 7438
7. R Casadio W Stoeckenius 1980 Effect of protein-protein interaction on light adaptation of bacteriorhodopsin. Biochemistry 19 3374 3381
8. JY Cassim 1992 Unique biphasic band shape of the visible circular dichroism of bacteriorhodopsin in purple membrane. Biophys J 63 1432 1442
9. RJM Cherry MP Heyn D Oesterhelt 1977 Rotational diffusion and exciton coupling of bacteriorhodopsin in the cell membrane of Halobacterium halobium. FEBS Lett 78 25 30
10. H-G Dellweg M Sumper 1978 Selective formation of bacterio-opsin trimers by chemical crosslinking of purple membrane. FEBS Lett 90 123 126
11. NA Dencher MP Heyn 1982 Preparation and properties of monomeric bacteriorhodopsin. Methods Enzymol 88 5 10
12. TG Ebrey B Becher MP Kilbride B Honig 1977 Exciton interaction and chromophore orientation in the purple membrane. Mol Biol 112 377 397
13. BW Edmonds H Lucke 2004 Atomic resolution structures and the mechanism of ion pumping in bacteriorhodopsin. Front Biosci 9 1556 1566
14. MA El-Sayed T Lin WR Mason 1989 Is there an excitonic interaction or antenna system in bacteriorhodopsin? Proc Natl Acad Sci USA 86 5376 5379
15. N Friedman M Ottolenghi M Sheves 2003 Heterogeneity effects in the binding of all-trans retinal to bacterio-opsin. Biochemistry 42 11281 11288
16. 11-type helical conformation of bacteriorhodopsin in the purple membrane. Biochemistry 28 2134 2139
17. Haas V, Buß V (1991) Through-space interaction and chromophore shape: the chiral 13-cis-retinal Schiff's base dimer. J Chem Soc Chem Commun 1320-1322
18. CA Hasselbacher JL Spudich TG Dewey 1988 Circular dichroism of halorhodopsin: comparison with bacteriorhodopsin and sensory rhodopsin I. Biochemistry 27 2540 2546
19. U Haupts J Tittor D Oesterhelt 1999 Closing in on bacteriorhodopsin: progress in understanding the molecule. Annu Rev Biophys Biomol Struct 28 367 399
20. R Henderson PNT Unwin 1975 Three-dimensional model of purple membrane obtained by electron microscopy. Nature (Lond) 257 28 32
21. R Henderson JM Baldwin TA Ceska 1990 Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J Mol Biol 213 899 929
22. MP Heyn 1989 Circular dichroism for determining secondary structure and state of aggregation of membrane proteins. Methods Enzymol 172 575 584
23. MP Heyn P-J Bauer NA Dencher 1975 A natural CD-label to probe the structure of the purple membrane from Halobacterium halobium by means of exciton coupling effect. Biochem Biophys Res Commun 67 897 903
24. D-J Jang MA El-Sayed LJ Stern T Mogi HG Khorana 1990 Sensitivity of the retinal circular dichroism of bacteriorhodopsin to the mutagenetic single substitution of amino acids: tyrosine. FEBS Lett 262 155 158
25. E Karnaukhova C Vasileiou A Wang N Berova K Nakanishi B Borhan 2006 Circular dichroism of heterochromophoric and partially regenerated purple membrane: search for exciton coupling. Chirality 18 72 83
26. M Kataoka K Mihara H Kamikubo R Needleman JK Lanyi F Tokunaga 1993 Trimeric mutant bacteriorhodopsin, D85N, shows a monophasic CD spectrum. FEBS Lett 333 111 113
27. R Korenstein B Hess 1978 Immobilization of bacteriorhodopsin and orientation of its transition moment in purple membrane. FEBS Lett 89 15 20
28. MP Krebs W Li TP Halambeck 1997 Intramembrane substitutions in helix D of bacteriorhodopsin disrupt the purple membrane. J Mol Biol 267 172 183
29. E Lam L Parker 1983 Nonionic detergent effects on spectroscopic characteristics and the photocycle of bacteriorhodopsin in purple membranes. Arch Biochem Biophys 221 557 564
30. JK Lanyi 2004 X-ray diffraction of bacteriorhodopsin photocycle intermediates. Mol Membr Biol 21 143 150
31. M Lu SP Balashov TG Ebrey N Chen Y Chen DR Menick RK Crouch 2000 Evidence for the rate of the final step in the bacteriorhodopsin photocycle being controlled by the proton release group: R134H mutant. Biochemistry 39 2325 2331
32. D Masotte J Aghion 1991 Bacteriorhodopsin "detergent-monomers", blue shift and velocity of light-dark adaptation. Biochem Biophys Res Commun 181 1301 1305
33. DD Muccio JY Cassim 1979 Interpretations of the effects of pH on the spectra of purple membrane. J Mol Biol 135 595 609
34. K Nakanishi R Crouch 1995 Application of artificial pigments to structure determination and study of photoinduced transformations of retinal proteins. Israel J Chem 35 253 272
35. D Oesterhelt W Stoeckenius 1974 Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol 31 667 768
36. B Rosinke K Strupat F Hillenkamp J Rosenbusch N Dencher U Krüger H-J Galla 1995 Matrix-assisted laser desorption/ionization mass spectrometry (MALDI MS) of membrane proteins and non-covalent complexes. J Mass Spectrom 30 1462 1468
37. Sasaki T, Sonoyama M, Demura M, Mitaku S (2005) Photobleaching of bacteriorhodopsin solubilized with Triton X-100. Photochem Photobiol (on-line preprint)
38. KL Schey DI Papac DR Knapp RK Crouch 1992 Matrix-assisted laser desorption mass spectrometry of rhodopsin and bacteriorhodopsin. Biophys J 63 1240 1243
39. H Sigrist P Zahler 1980 Heterobifunctional crosslinking of bacteriorhodopsin by azidophenylisothiocyanate. FEBS Lett 113 307 311
40. JL Spudich DA McCain K Nakanishi M Okabe N Shimizu H Rodman B Honig R Bogomolni 1986 Chromophore/protein interaction in bacterial sensory rhodopsin and bacteriorhodopsin. Biophys J 49 479 483
41. S Steinmuller V Buß W Gartner 1995 Circular dichroism spectroscopy of the retinal chromophore during the photocycle of bacteriorhodopsin and its D96N mutant derivative. J Photochem Photobiol B 31 139 144
42. W Stoeckenius RH Lozier RA Bogomolni 1982 Bacteriorhodopsin and related pigments of halobacteria. Annu Rev Biochem 51 587 616
43. J Tittor S Paula S Subramaniam J Heberle R Henderson D Oesterhelt 2002 Proton translocation by bacteriorhodopsin in the absence of substantial conformational changes. J Mol Biol 319 555 565
44. H Vogel W Gartner 1987 The secondary structure of bacteriorhodopsin determined by Raman and circular dichroism spectroscopy. J Biol Mol 262 11464 11469
45. V Volkov P Svirko Yu VF Kamalov L Song MA El-Sayed 1997 Optical rotation of the second harmonic radiation from retinal in bacteriorhodopsin monomers in Langmuir-Blodgett film: evidence for nonplanar retinal structure Biophys J 73 3164 3170
46. JP Whitelegge CB Gundersen KF Faull 1998 Electrospray-ionization mass spectrometry of intact intrinsic membrane proteins. Protein Sci 7 1 8
47. S Wu MA El-Sayed 1991 CD spectrum of bacteriorhodopsin: best evidence against exiton model. Biophys J 60 190 197
48. S Wu ES Awad MA El-Sayed 1991 Circular dichroism and photocycle kinetics of partially detergent solubilized and partially retinal regenerated bacteriorhodopsin. Biophys J 59 70 75
49. Y Yokoyama M Sonoyama S Mitaku 2004 Inhomogeneous stability of bacteriorhodopsin in purple membrane against photobleaching at high temperature. Proteins Struct Funct Bioinf 54 442 454