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Volumn 32, Issue WEB SERVER ISS., 2004, Pages

New challenges in gene expression data analysis and the extended GEPAS

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

EID: 3242882895     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh421     Document Type: Article
Times cited : (46)

References (43)
  • 4
    • 0141994858 scopus 로고    scopus 로고
    • Genomic microarrays in human genetic disease and cancer
    • Albertson,D.G. and Pinkel,D. (2003) Genomic microarrays in human genetic disease and cancer Hum. Mol. Genet., 12, 145R-152R.
    • (2003) Hum. Mol. Genet. , vol.12
    • Albertson, D.G.1    Pinkel, D.2
  • 6
    • 0036796319 scopus 로고    scopus 로고
    • Using text analysis to identify functionally coherent gene groups
    • Raychaudhuri,S., Schutze,H. and Altman,R.B. (2002) Using text analysis to identify functionally coherent gene groups. Genome Res., 12, 1582-1590.
    • (2002) Genome Res. , vol.12 , pp. 1582-1590
    • Raychaudhuri, S.1    Schutze, H.2    Altman, R.B.3
  • 7
  • 11
    • 0037263812 scopus 로고    scopus 로고
    • MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
    • Doniger,S.W., Salomonis,N., Dahlquist,K.D., Vranizan,K., Lawlor,S.C. and Conklin,B.R. (2003) MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol., 4, R7.
    • (2003) Genome Biol. , vol.4
    • Doniger, S.W.1    Salomonis, N.2    Dahlquist, K.D.3    Vranizan, K.4    Lawlor, S.C.5    Conklin, B.R.6
  • 13
    • 1542399989 scopus 로고    scopus 로고
    • FatiGO: A web tool for finding significant associations of Gene Ontology terms to groups of genes
    • Al-Shahrour,F., Díaz-Uriarte,R. and Dopazo,J. (2004) FatiGO: a web tool for finding significant associations of Gene Ontology terms to groups of genes. Bioinformatics, 20, 578-580.
    • (2004) Bioinformatics , vol.20 , pp. 578-580
    • Al-Shahrour, F.1    Díaz-Uriarte, R.2    Dopazo, J.3
  • 14
    • 3242888157 scopus 로고    scopus 로고
    • Using Gene Ontology on genome-scale studies to find significant associations of biologically relevant terms to group of genes
    • IEEE Press. New York
    • Al-Shahrour,F., Herrero,J., Mateos,A., Santoyo,J., Diaz-Uriarte,R. and Dopazo,J. (2003) Using Gene Ontology on genome-scale studies to find significant associations of biologically relevant terms to group of genes. In Neural Networks for Signal Processing XIII. IEEE Press. New York, pp. 43-52.
    • (2003) Neural Networks for Signal Processing XIII , pp. 43-52
    • Al-Shahrour, F.1    Herrero, J.2    Mateos, A.3    Santoyo, J.4    Diaz-Uriarte, R.5    Dopazo, J.6
  • 15
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: Gene expression data analysis comes of age
    • Slonim,D.K. (2002) From patterns to pathways: gene expression data analysis comes of age. Nature Genet., 32 (Suppl), 502-508.
    • (2002) Nature Genet. , vol.32 , Issue.SUPPL. , pp. 502-508
    • Slonim, D.K.1
  • 17
    • 0037245343 scopus 로고    scopus 로고
    • Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
    • Simon,R., Radmacher,M.D., Dobbin,K. and McShane,L.M. (2003) Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J. Natl Cancer Inst., 95, 14-18.
    • (2003) J. Natl. Cancer Inst. , vol.95 , pp. 14-18
    • Simon, R.1    Radmacher, M.D.2    Dobbin, K.3    McShane, L.M.4
  • 20
    • 0036767162 scopus 로고    scopus 로고
    • Combining hierarchical clustering and self-organizing maps for exploratory analysis of gene expression patterns
    • Herrero,J. and Dopazo,J. (2002) Combining hierarchical clustering and self-organizing maps for exploratory analysis of gene expression patterns. J. Proteome Res., 1, 467-470.
    • (2002) J. Proteome Res. , vol.1 , pp. 467-470
    • Herrero, J.1    Dopazo, J.2
  • 23
    • 0031042985 scopus 로고    scopus 로고
    • Phylogenetic reconstruction using a growing neural network that adopts the topology of a phylogenetic tree
    • Dopazo,J. and Carazo,J.M. (1997) Phylogenetic reconstruction using a growing neural network that adopts the topology of a phylogenetic tree. J. Mol. Evol., 44, 226-233.
    • (1997) J. Mol. Evol. , vol.44 , pp. 226-233
    • Dopazo, J.1    Carazo, J.M.2
  • 24
    • 0003410791 scopus 로고    scopus 로고
    • Self-organizing maps
    • Springer-Verlag. Berlin
    • Kohonen,T. (1997) Self-organizing maps. Springer-Verlag. Berlin.
    • (1997)
    • Kohonen, T.1
  • 26
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B, 57, 289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 27
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini,Y. and Yekutieli,D. (2001) The control of the false discovery rate in multiple testing under dependency. Ann. Stat., 29, 1165-1188.
    • (2001) Ann. Stat. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 31
    • 0033636139 scopus 로고    scopus 로고
    • Support vector machine classification and validation of cancer tissue samples using microarray expression data
    • Furey,T.S., Cristianini,N., Duffy,N., Bednarski,D.W., Schummer,M. and Haussler,D. (2000) Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics, 16, 906-914.
    • (2000) Bioinformatics , vol.16 , pp. 906-914
    • Furey, T.S.1    Cristianini, N.2    Duffy, N.3    Bednarski, D.W.4    Schummer, M.5    Haussler, D.6
  • 32
    • 3242876154 scopus 로고    scopus 로고
    • Use of GO terms to understand the biological significance of Microarray Differential Gene Expression Data
    • Johnson,K.F. and Lin,S.M. eds Kluwer Academic
    • Díaz-Uriarte,R., Al-Shahrour,F. and Dopazo,J. (2003) Use of GO terms to understand the biological significance of Microarray Differential Gene Expression Data. In Johnson,K.F. and Lin,S.M. (eds), Microarray Data Analysis III. Kluwer Academic. pp. 233-247.
    • (2003) Microarray Data Analysis III , pp. 233-247
    • Díaz-Uriarte, R.1    Al-Shahrour, F.2    Dopazo, J.3
  • 33
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang,Y.H., Dudoit,S., Luu,P., Lin,D.M., Peng,V., Ngai,J. and Speed,T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30, e15.
    • (2002) Nucleic Acids Res. , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 35
    • 0037076322 scopus 로고    scopus 로고
    • Selection bias in gene extraction on the basis of microarray gene-expression data
    • Ambroise,C. and McLachlan,G.J. (2002) Selection bias in gene extraction on the basis of microarray gene-expression data. Proc. Natl Acad. Sci., USA, 99, 6562-6566.
    • (2002) Proc. Natl. Acad. Sci., USA , vol.99 , pp. 6562-6566
    • Ambroise, C.1    McLachlan, G.J.2
  • 36
    • 0036489046 scopus 로고    scopus 로고
    • Comparison of discrimination methods for the classification of tumors suing gene expression data
    • Dudoit,S., Fridlyand,J. and Speed,T.P. (2002) Comparison of discrimination methods for the classification of tumors suing gene expression data. J. Am. Stat. Assoc., 97, 77-87.
    • (2002) J. Am. Stat. Assoc. , vol.97 , pp. 77-87
    • Dudoit, S.1    Fridlyand, J.2    Speed, T.P.3
  • 37
    • 0037447386 scopus 로고    scopus 로고
    • Pattern recognition in gene expression profiling using DNA array: A comparative study of different statistical methods applied to cancer classification
    • Romualdi,C., Campanaro,S., Campagna,D., Celegato,B., Cannata,N., Toppo,S. Valle,G. and Lan franchi,G. (2003) Pattern recognition in gene expression profiling using DNA array: a comparative study of different statistical methods applied to cancer classification. Hum. Mol. Genet., 12, 823-836.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 823-836
    • Romualdi, C.1    Campanarov, S.2    Campagna, D.3    Celegato, B.4    Cannata, N.5    Toppo, S.6    Valle, G.7    Lan franchi, G.8
  • 41
    • 0034714421 scopus 로고    scopus 로고
    • Gene expression data analysis
    • Brazma,A. and Vilo,J. (2000) Gene expression data analysis. FEBS Lett., 480, 17-24.
    • (2000) FEBS Lett. , vol.480 , pp. 17-24
    • Brazma, A.1    Vilo, J.2
  • 42
    • 0037772416 scopus 로고    scopus 로고
    • Coupled two-way clustering server
    • Getz,G. and Domany,E. (2003) Coupled two-way clustering server. Bioinformatics, 19, 1153-1154.
    • (2003) Bioinformatics , vol.19 , pp. 1153-1154
    • Getz, G.1    Domany, E.2


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