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Volumn 32, Issue WEB SERVER ISS., 2004, Pages

ACMES: Fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval

Author keywords

[No Author keywords available]

Indexed keywords

REPETITIVE DNA;

EID: 3242882563     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh455     Document Type: Article
Times cited : (10)

References (13)
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    • New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis
    • Ogawa,N., DeRisi,J. and Brown,P. (2000) New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis. Mol. Biol. Cell., 11, 4309-4321.
    • (2000) Mol. Biol. Cell. , vol.11 , pp. 4309-4321
    • Ogawa, N.1    DeRisi, J.2    Brown, P.3
  • 3
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeat finder: A program to analyze DNA sequences
    • Benson,G. (1999) Tandem repeat finder: a program to analyze DNA sequences. Nucleic Acids Res., 27, 573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 4
    • 3242886441 scopus 로고    scopus 로고
    • An efficient algorithm for finding short approximate non-tandem repeats Bioinformatics
    • Adebiyi,E.F., Jiang,T. and Kaufmann,M. (2001) An efficient algorithm for finding short approximate non-tandem repeats. Bioinformatics, 17, S5-S12.
    • (2001) , vol.17
    • Adebiyi, E.F.1    Jiang, T.2    Kaufmann, M.3
  • 5
  • 6
    • 0035999989 scopus 로고    scopus 로고
    • TROLL - Tandem repeat occurrence locator
    • Castelo,A., Martins,W. and Gao,G. (2002) TROLL - tandem repeat occurrence locator. Bioinformatics, 18, 634-636.
    • (2002) Bioinformatics , vol.18 , pp. 634-636
    • Castelo, A.1    Martins, W.2    Gao, G.3
  • 7
    • 0043123037 scopus 로고    scopus 로고
    • mreps: Efficient and flexible detection of tandem repeats in DNA
    • Kolpakov,R., Bana,G. and Kucherov,G. (2003) mreps: efficient and flexible detection of tandem repeats in DNA. Nucleic Acids Res., 31, 3672-3678.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3672-3678
    • Kolpakov, R.1    Bana, G.2    Kucherov, G.3
  • 8
    • 0004137004 scopus 로고    scopus 로고
    • Algorithms on Strings, Trees and Sequences: Computer Science and Computational Biology
    • Cambridge University Press, Cambridge, UK
    • Gusfield,D. (1997) Algorithms on Strings, Trees and Sequences: Computer Science and Computational Biology. Cambridge University Press, Cambridge, UK.
    • (1997)
    • Gusfield, D.1
  • 9
    • 0042151442 scopus 로고    scopus 로고
    • Beyond tandem repeats: Complex pattern structures and distant regions of similarity
    • Hauth,A. and Joseph,D. (2002) Beyond tandem repeats: complex pattern structures and distant regions of similarity. Bioinformatics, 18, S31-S37.
    • (2002) Bioinformatics , vol.18
    • Hauth, A.1    Joseph, D.2
  • 11
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: A fast search method for large DNA databases
    • Ning,Z., Cox,A.J. and Mullikin,J.C. (2001) SSAHA: a fast search method for large DNA databases. Genome Res, 11, 1725-1729.
    • (2001) Genome Res , vol.11 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 13
    • 0005540823 scopus 로고    scopus 로고
    • Modern Information Retrieval
    • ACM Press, New York, NY
    • Baeza-Yates,R. and Ribeiro-Neto,B. (1999) Modern Information Retrieval. ACM Press, New York, NY.
    • (1999)
    • Baeza-Yates, R.1    Ribeiro-Neto, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.