Molecular approaches for microbioal classification and ecology;Le point sur les outils moléculaires de classification et d'écologie microbienne

Sciences des Aliments

Volumn 22, Issue 1-2, 2002, Pages 5-21

  Tailliez, Patrick ^a   Beaud, Diane ^a   Ogier, Jean Claude ^a  

^a CEMAGREF   (France)

Author keywords

Bacteria; Identification; Molecular diversity; Molecular typing method

Indexed keywords

PROKARYOTA;

EID: 3242794607     PISSN: 02408813     EISSN: None     Source Type: Journal    
DOI: 10.3166/sda.22.5-21     Document Type: Article

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6. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analysing mixed microbial populations
7. Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independant methods to investigate traditional fermentations
8. Microbial community dynamics during production of the Mexican fermented maize dough pozol
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12. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
13. Use of long-range repetitive element polymorphism-PCR to differenciate Bacillus anthracis strains
14. Determination of chromosome size and number of rrn loci in Lactobacillus plantarum by pulsed-field gel electrophoresis
15. Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms
16. Molecular diversity of Leuconostoc mesenteroides and Leuconostoc citreum isolated from traditional French cheeses as revealed by RAPD fingerprinting, 16S rDNA sequencing and 16S rDNA fragment amplification
17. The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
18. Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA
19. Sizing of the Lactobacillus plantarum genome and other lactic acid bacteria species by transverse alternating field electrophoresis
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27. The phylogeny of prokaryotes
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29. Determination of the genome size of four Propionibacterium species by pulsed-field gel electrophoresis
30. Use of an amplified-fragment length polymorphism technique to fingerprint and differenciate isolates of Helicobacter pylori
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32. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
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57. Comparison of sample sequences of the Salmonella typhi genome to the sequence of the complete Escherichia coli K-12 genome
58. Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting
59. Differentiation of Lactobacillus delbrueckii subspecies by ribotyping and amplified ribosomal DNA restriction analysis (ARDRA)
60. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
61. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
62. The structural basis of ribosome activity in peptide bond synthesis
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64. Diversification of Escherichia coli genomes: Are bacteriophages the major contributors?
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66. The analysis of natural microbial communities by ribosomal RNA sequences
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68. Genome sequence of enterohaemorrhagic Eseherichia coli 0157:H7
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70. Analysis of electrophoretic whole-organism protein fingerprints
71. Genome sequences of Chlamydia trachomatis MoPn and Chiamidia pneumoniae AR39
72. Amplified fragment length polymorphism (AFLP) analysis of Listeria monocytogenes
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75. Strain characterization, genome size and plasmid content in the Lactobacillus acidophilus group (HANSEN and MOCQUOT)
76. Physical and genetic map of Streptococcus thermophilus A054
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82. Estimation de la diversité parmi les souches de la collection CNRZ: Application de la RAPD à un groupe de lactobacilles
83. Molecular diversity and relationship within Lactococcus lactis, as revealed by Randomly amplified polymorphic DNA (RAPD)
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85. A PCR fingerprinting technique to distinguish isolates of Lactococcus lactis
86. Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms
87. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
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90. Flow cytometric analysis of activated sludge with rRNA-targeted probes
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92. Fingerprinting genomes using PCR with arbitrary primers
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95. Examination of two years of community dynamics in an anaerobic bioreactor using fluorescent polymerase chain reaction (PCR) single-strand conformation polymorphism analysis