Bootstrap analysis and major DNA markers of BM4311 microsatellite locus in Hanwoo chromosome 6

Asian-Australasian Journal of Animal Sciences

Volumn 17, Issue 8, 2004, Pages 1033-1038

  Yeo, Jung Sou ^a   Kim, Jae Woo ^a   Shin, Hyo Sub ^a   Lee, Jea Young ^a  

^a Yeungnam University   (South Korea)

Author keywords

Bootstrap analysis; K means Clustering; LOD Score; Permutation Test; QTL

Indexed keywords

TRANSPOSONS;

EID: 3242715812     PISSN: 10112367     EISSN: None     Source Type: Journal    
DOI: 10.5713/ajas.2004.1033     Document Type: Article

References (24)

1. Bishop, M. D., S. M. Kappes, J. W. Keele, R. T. Stone, S. L. F. Sunden, G. A. Hawkins, S. S. Toddo, R. Fries, M. D. Grosz, J. Yoo and C. W. Beattier. 1994. A genetic linkage map for cattle. Genetics 136:619-639.
2. Casas, E., S. D. Shackelford, J. W. Keele, R. T. Stone, S. M. Kappes and M. Koohmaraie. 1999a. Evidence of quantitative trait loci affecting growth and carcass composition traits in cattle segregating the muscle hypertrophy locus. J. Anim. Sci. 77 Supplement(1):126-127.
3. Casas, E., J. W. Keele, S. M. Kappes and R. T. Stone. 1999b. A quantitative trait locus for birth and yearling weight segregates on chromosome 6 in Bos Taurus cattle. Plant & Animal Genome VII Conference, San Diego, CA: p. 150.
4. Chotai, J. 1984. On the lod score method in linkage analysis. Ann. Hum. Genet. 48:359-378.
5. Churchill, G. A. and R. W. Doerge. 1994. Empirical Threshold Values for Quantitative Trait Mapping, Genetics 138:963-971.
6. Efron, B. and R. Tibshirani. 1993. "An Introdction to bootstrap" CHAMPMAN & HALL
7. Georges, M., D. Nielsen, M. Mackinnon, A. Mishra, R. Okimoto, A. T. Pasquino, L. S. Sargeant, A. Sorenson, M. R. Steele, X. Zhao, J. E. Womack and I. Hoeschele. 1995. Mapping quantitative trait loci controlling milk production in dairy cattle by exploting progeny testing. Genetics 139:907-920.
8. Good, P. 1994. Permutation Test: A peactical Guide to resampling for testing Hypothesis, Spring-Verlag, New York.
9. Hirano, T., N. Kobayashi, T. Nakamaru, K. Hara and Y. Sugimoto. 1998. Linkage analysis of meat quality in Wagyu. 26th International Conference on Animal Genetics, Auckland, New Zealand:E019.
10. Kim, J. W., S. I. Park and J. S. Yeo. 2003. Linkage Mapping and QTL on Chromosome 6 in Hanwoo (Korean Cattle). Asian-Aust. J. Anim. Sci. 16(10):1402-1405.
11. Kim, J. W., T. K. Jang, Y. A. Park and J. S. Yeo. 2000. Linkage mapping of chromosome 6 in the Korean Cattle (Hanwoo). Asian-Aust. Anim. Sci. 13 (Suppl.):235.
12. Kim, M. J., J. Y. Lee, J. S. Yeo, Y. W. Lee and Y. J. Joe. 2003. A major DNA mining of BM4311 in Hanwoo. Proceedings of the Spring Conference, Cheju National Univ. 305-311.
13. Knott, S. A. and C. S. Haley. 1992. Aspects of maximum likelihood method methods for the mapping of quantitative trait loci in line crosses. Genet. Res. 60:139-151.
14. Lander, E. and D. Bostein. 1989. Mapping mendelian factors underlying quantative traits using RFLP linkage maps. Genetics 121:185-199.
15. McPherron, A. C. and S. J. Lee. 1997. Double muscling in cattle due to mutations in the myostatin gene. Proc. Natl. Acad. Sci. USA 23:12457-12461.
16. Ott, Jurg. 1999. Analysis of human genetic linkage, 3rd ed. The Johns Hopkins university press.
17. Mannen, H. S., F. Tsuji, F. Mukai, N. Goto and S. Ohtagaki. 1993. Genetic Similarity using DNA fingerprinting in cattle to determine relationship coefficient. J. Hered. 84:166-169.
18. Peter, M. Visscher, Robin Thompson and Chris S. Haley. 1996. Confidence Intervals in QTL Mapping by Bootstrapping. Genetics 143:1013-1020.
19. Phillip, G. 1994. "Permutation Test" Springer-Verlag.
20. Rassman, K., C. Scholotterer and D. Tautz. 1991. Isolation of simple-sequence loci for use in polymerase chain reaction base DNA fingerprinting. Electrophoresis 12:113-118.
21. Roslin Institute 2000. Bovine gene map. URL=http://ri.bbsrc.ac.uk/
22. Stone, R. T., E. Casas, S. M. Cappes and J. W. Keele. 1999. Status of mapping bovine QTL at the U.S. meat animal research center. Plant-Animal Genome VII Conference, San Diego, CA:W34.
23. Taylor, J. F., S. K. Davis, J. O. Sanders, J. W. Turner, R. K. Miller and S. B. Smith. 1998. Identification of QTLs for growth and carcass quality in a cross between Bos indicus and Bos taurus. Plant-Animal Genome VII Conference, San Diego, CA:W19.
24. Weller, J. I. 1986. Maximum likelihood techniques for the mapping and analysis quantitative trait loci with the aid of genetic markers. Biometrics 42:627-640.