A simple method for the extraction, PCR-amplification, cloning, and sequencing of Pasteuria 16S rDNA from small numbers of endospores

Journal of Nematology

Volumn 36, Issue 1, 2004, Pages 100-105

  Atibalentja, N ^a   Noel, G R ^a   Ciancio, A ^b  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b CNR   (Italy)

Author keywords

16S rDNA sequence; DNA extraction method; Pasteuria spp.; Phylogeny; Taxonomy

Indexed keywords

BACTERIA (MICROORGANISMS); BELONOLAIMUS; BELONOLAIMUS LONGICAUDATUS; CANDIDATUS PASTEURIA USGAE; HETERODERA; HETERODERA GLYCINES; MELOIDOGYNE; NEMATODA; PASTEURIA; PASTEURIA NISHIZAWAE; PASTEURIA PENETRANS; PROKARYOTA; VISCUM; VISCUM ALBUM;

EID: 3242690788     PISSN: 0022300X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (31)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. Journal of Molecular Biology 215:403-410.
2. Anderson, J. M., J. F. Preston, D. W. Dickson, T. E. Hewlett, N. H. Williams, and J. E. Maruniak. 1999. Phylogenetic analysis of Pasteuria penetrans by 16S rRNA gene cloning and sequencing. Journal of Nematology 31:319-325.
3. Atibalentja, N., G. R. Noel, and L. L. Domier. 2000. Phylogenetic position of the North American isolate of Pasteuria that parasitizes the soybean cyst nematode, Heterodera glycines, as inferred from 16S rDNA sequence analysis. International Journal of Systematic and Evolutionary Microbiology 50:605-613.
4. Atibalentja, N., G. R. Noel, T. F. Liao, and G. Z. Gertner. 1998. Population changes in Heterodera glycines and its bacterial parasite Pasteuria sp. in naturally infested soil. Journal of Nematology 30:81-92.
5. Bekal, S., J. Borneman, M. S. Springer, R. M. Giblin-Davis, and J. O. Becker. 2001. Phenotypic and molecular analysis of a Pasteuria strain parasitic to the sting nematode. Journal of Nematology 33:110-115.
6. Bishop, A. H., and D. J. Ellar. 1991. Attempts to culture Pasteuria penetrans in vitro. Biocontrol Science and Technology 1:101-114.
7. Chen, Z. X., and D. W. Dickson. 1998. Review of Pasteuria penetrans: Biology, ecology, and biological control potential. Journal of Nematology 30:313-340.
8. Ciancio, A., R. Bonsignore, N. Vovlas, and F. Lamberti. 1994. Host records and spore morphometrics of Pasteuria penetrans group parasites of nematodes. Journal of Invertebrate Pathology 63:260-267.
9. Ciancio, A., P. Leonetti, and M. M. F. Sialer. 2000. Detection of nematode antagonistic bacteria by fluorogenic molecular probes. OEPP/EPPO Bulletin 30:563-569.
10. Davies, K. G., C. A. Flynn, V. Laird, and B. R. Kerry. 1990. The life-cycle, population dynamics, and host specificity of a parasite of Heterodera avenae, similar to Pasteuria penetrans. Revue de Nématologie 13:303-309.
11. Ebert, D., P. Rainey, T. M. Embley, and D. Scholz. 1996. Development, life cycle, ultrastructure, and phylogenetic position of Pasteuria, ramosa Metchnikoff 1888: Rediscovery of an obligate endoparasite of Daphnia magna Straus. Philosophical Transactions of the Royal Society of London B 351:1689-1701.
12. Giblin-Davis, R. M., L. L. McDaniel, and F. G. Bilz. 1990. Isolates of the Pasteuria penetrans group from phytoparasitic nematodes in bermudagrass turf. Supplement to the Journal of Nematology 22:750-762.
13. Giblin-Davis, R. M., D. S. Williams, S. Bekal, D. W. Dickson, J. A. Brito, J. O. Becker, and J. F. Preston. 2003. 'Candidatus Pasteuria usgae' sp. nov., an obligate endoparasite of the phytoparasitic nematode Belonolaimus longicaudatus. International Journal of Systematic and Evolutionary Microbiology 53:197-200.
14. Hewlett, T. E., J. F. Gerber, K. S. Smith, and J. H. White. 2002. In vitro culture of Pasteuria, penetrans. Nematology 4:152-153 (Abstr.).
15. Lane, D. J. 1991. 16S/23S rRNA sequencing. Pp. 115-176 in E. Stackebrandt and M. Goodfellow, eds. Nucleic acid techniques in bacterial systematics. New York, NY: John Wiley.
16. Maidak, B., J. R. Cole, C. T. Parker Jr., G. M. Garrity, N. Larsen, B. Li, T. G. Lilburn, M. J. McCaughey, G. J. Olsen, R. Overbeek, S. Pramanik, T. M. Schmidt, J. M. Tiedje, and C. R. Woese. 1999. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Research 27:171-173.
17. Mankau, R. 1975. Bacillus penetrans n. comb. causing a virulent disease of plant-parasitic nematodes. Journal of Invertebrate Pathology 26:333-339.
18. Metchnikoff, M. E. 1888. Pasteuria ramosa. Un représentant des bactéries à division longitudinale. Annales de l'Institut Pasteur 2:165-170.
19. Nishizawa, T. 1986. On a strain of Pasteuria penetrans parasitic to cyst nematodes. Revue de Nématologie 9:303-304 (Abstr.).
20. Noel, G. R., and B. A. Stanger. 1994. First report of Pasteuria sp. attacking Heterodera glycines in North America. Supplement to the Journal of Nematology 26:612-615.
21. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual, 2nd ed. New York, NY: Cold Spring Harbor Laboratory Press.
22. Sayre, R. M., and M. P. Starr. 1985. Pasteuria penetrans (ex Thorne, 1940) nom. rev., comb, n., sp. n., a mycelial and endospore-forming bacterium parasitic in plant-parasitic nematodes. Proceedings of the Helminthological Society of Washington 52:149-165.
23. Sayre, R. M., and M. P. Starr. 1988. Bacterial diseases and antagonisms of nematodes. Pp. 69-101 in G. O. Poinar, Jr., and H. -B. Janson, eds. Diseases of nematodes. Boca Raton, FL: CRC Press.
24. AL emend. Sayre and Starr 1985, 149, Starr and Sayre 1988a, 27 (Nom. Cons. Opin. 61 Jud. Comm. 1986, 119. Not Pasteuria in the sense of Henrici and Johnson (1935), Hirsch (1972), or Staley (1973); see Starr et al. (1983) and Judicial Commission (1986). Pp. 2601-2615 in S. T. Williams, M. E. Sharpe, and J. G. Holt, eds. Bergey's manual of systematic bacteriology, vol. 4. Baltimore, MD: Williams and Wilkins.
25. Sayre, R. M., W. P. Wergin, J. M. Schmidt, and M. P. Starr. 1991. Pasteuria nishizawae sp. nov., a mycelial and endospore-forming bacterium parasitic on cyst nematodes of genera Heterodera and Globodera. Research in Microbiology 142:551-564.
26. Starr, M. P., and R. M. Sayre. 1988. Pasteuria thornei sp. nov. and Pasteuria penetrans sensu stricto emend., mycelial and endospore-forming bacteria parasitic, respectively, on plant-parasitic nematodes of the genera Pratylenchus and Meloidogyne. Annales de l'Institut Pasteur/Microbiologie 139:11-31.
27. Stirling, G. R. 1981. Effect of temperature on infection of Meloidogyne javanica by Bacillus penetrans. Nematologica 27:458-462.
28. Sturhan, D. 1988. New host and geographical records of nematode-parasitic bacteria of the Pasteuria penetrans group. Nematologica 34: 350-356.
29. Sturhan, D., R. Winkelheide, R. M. Sayre, and W. P. Wergin. 1994. Light and electron microscopical studies of the life cycle and developmental stages of a Pasteuria isolate parasitizing the pea cyst nematode, Heterodera goettingiana. Fundamental and Applied Nematology 17:29-42.
30. Whitcombe, D., J. Theaker, S. P. Guy, T. Brown, and S. Little. 1999. Detection of PCR products using self-probing amplicons and fluorescence. Nature Biotechnology 17:804-807.
31. Williams, A. B., G. R. Stirling, A. C. Hayward, and J. Perry. 1989. Properties and attempted culture of Pasteuria penetrans, a bacterial parasite of root-knot nematodes (Meloidogyne javanica). Journal of Applied Bacteriology 67:145-156.