Molecular phylogeny of Anthyllis spp.

Plant Biology

Volumn 6, Issue 4, 2004, Pages 454-464

  Nanni, L ^a   Ferradini, N ^a   Taffetani, F ^a   Papa, R ^a  

^a UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

Author keywords

Anthyllis spp; CpSSR; ITS; Loteae; Phylogeny

Indexed keywords

CHLOROPLAST DNA; PLANT DNA; RIBOSOMAL SPACER DNA;

GENETIC VARIATION; MOLECULAR ANALYSIS; MORPHOLOGY; PHYLOGENY; TAXONOMY;

ARTICLE; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; LEGUME; MOLECULAR BIOLOGY; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENCE;

BASE SEQUENCE; DNA, CHLOROPLAST; DNA, PLANT; DNA, RIBOSOMAL SPACER; FABACEAE; MOLECULAR BIOLOGY; PHYLOGENY; SPECIES SPECIFICITY; VARIATION (GENETICS);

ANTHYLLIS; ANTHYLLIS MONTANA; ANTHYLLIS VULNERARIA; EMBRYOPHYTA; FABACEAE; LOTEAE; LOTUS;

EID: 3242689869     PISSN: 14358603     EISSN: None     Source Type: Journal    
DOI: 10.1055/s-2004-820968     Document Type: Article

References (56)

1. Allan, G. J. and Porter, J. M. (2000) Tribal delimitation and phylogenetic relationships of Loteae and Coronilleae (Faboideae: Fabaceae) with special reference to Lotus: evidence from nuclear ribosomal ITS sequences. American Journal of Botany 87, 1871-881.
2. Allan, G. J., Zimmer, E. A., Wagner, W. L., and Sokoloff, D. D. (unpublished) Origin and classification of tribe Loteae (Faboideae: Fabaceae): insight based on phylogenetic analysis of internal transcribed spacer regions of nrDNA.
3. Bena, G., Lejeune, B., Prosperi, J. M., and Olivieri, I. (1998) Molecular phylogenetic approach for studying life-history evolution: the ambiguous example of the genus Medicago L. Proceedings of the Royal Society, London B 265, 1141-1151.
4. Benedí, C. (2000) Anthyllis L. In Flora Iberica, Plantas Vasculares de la Península Ibérica, Vol. VII (II), Leguminosae (Partim) (Talavera, S., Aedo C., Castroviejo, S. et al., eds.), Madrid: Real Jardín Botánico, CSIC, pp.829-863.
5. Couderc, H. (1971 a) Sur la biologie florale de l'Anthyllis vulneraria L. C. R. Acad. Sci. Paris, 272, 1256-1259.
6. Couderc, H. (1971 b) Etude expérimentale de la reproduction de l'Anthyllis vulneraria L. Bulletin of the Botanical Society, France 118, 359-374.
7. Couderc, H. (1975) Le développement hétéroblatique chez les espèces françaises du genre Anthyllis. Bulletin of the Botanical Society, France 122, 139-152.
8. Couderc, H. (1980) Biologie florale de quelques espèces du genre Anthyllis L. et notamment de l'A. montana L. Bulletin of the Botanical Society, France 127, 139-149.
9. Couderc, H. and Gorenflot, R. (1978) Adaptation de la fleur entomophile de l'Anthyllis vulneraria L. à l'autogamie. Bulletin of the Botanical Society, France 125, 369-378.
10. Cullen, J. (1968) Anthyllis L., In Flora Europaea, Rosaceae to Umbelliferae, Vol. 2 (Tutin, T. G., Heywood, V. H., Burges, N. A. et al., eds.), Cambridge: Cambridge University Press, pp.179-181.
11. Cullen, J. (1976) The Anthyllis vulneraria complex: a résumé. Notes of the Royal Botanical Gardens, Edinburgh 43, 277-281.
12. Cullen, J. (1986) Anthyllis L. In Flora Europaea, Rosaceae to Umbelliferae, Vol. 2 (Tutin T. G., Heywood, V. H., Burges, N. A. et al., eds.), Cambridge: Cambridge University Press, pp.177-182.
13. Dice, L. R. (1945) Measures of the amount of the ecologic association between species. Ecology 26, 297-302.
14. Diez, M. and Ferguson, I. K. (1990) Studies on the pollen morphology and taxonomy of the tribes Loteae and Coronilleae (Leguminosae: Papilonoideae). Anthyllis L. and related genera. Lagascalia 16, 77-94.
15. Doyle, J. J. (1992) Gene trees and species trees: molecular systematics as one character taxonomy. Systematic Botany 17, 144-163.
16. Duke, J. A. (1983) Handbook of legumes of world economic importance. New York: Plenum Press, pp.345.
17. Federov, A. A. (1969) Khromosomnye chisla tsetkovykh rasteny. Leningrad: Scientific Press.
18. Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
19. Grant, W. F. (1995) A chromosome atlas and interspecific-intergeneric index for Lotus and Tetragonolobus (Fabaceae). Canadian Journal of Botany 73, 1787-1809.
20. Greuter, W., Burdet, H. M., and Long, G. (1989) Med-Checklist. A critical inventory of vascular plants of the circui-mediterranean countries, Vol. 4. Genève, Berlin, 2-214.
21. Heywood, V. H. and Ball, P. W. (1968) Leguminosae. In Flora Europea, Vol. 2. (Tutin, T. G., Heywood, V. H., Burges, N. A., and Valentine, D. H., eds.), Cambridge: Cambridge University Press.
22. Hillis, D. M. and Bull, J. J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42, 182-192.
23. Ishii, T. and McCouch, S. R. (2000) Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species. Theoretical Applied Genetics 100, 1257-1266.
24. Ishii, T., Mori, N., and Ogihara Y. (2001) Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species. Theoretical Applied Genetics 103, 896-904.
25. Kato, T., Kaneko, T., Sato, S., Nakamura, Y., and Tabata, S. (2000) Complete structure of the chloroplast genome of a legume, Lotus japonicus. DNA Research 7, 323-330.
26. Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111-120.
27. Kropf, M., Kaderett, J. W., and Comes, H. P. (2002) Late Quaternary distributional stasis in the submediterranean mountain plant Anthyllis montana L. (Fabaceae) inferred from ITS sequences and amplified fragment length polymorphism markers. Molecular Ecology 11, 447-463.
28. Kumar, S., Tamura, K., Jakobsen, I. B., and Nei, M. (2001) MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17, 1244-1245.
29. Lampinen, R. (1992) Anthyllis vulneraria complex in Finland. Memoranda Society for Fauna Flora Fennica 68, 105-117.
30. Lande, R. and Schemske, D. W. (1985) The evolution of self-fertilization and inbreeding depression in plants. I. Genetic models. Evolution 39, 24-40.
31. Lassen, P. (1986) Tripodium graecum, Tripodium kremerianum. In Med-Checklist Notulae (Greuter, W. and Raus, T., eds.), 13- Wildenovia 16, 114.
32. Lesins, K. A. and Lesins, I. (1979) Genus Medicago (Leguminosae), a Taxogenetic Study. The Hague, Netherlands: Junk Publishers, pp.228.
33. Marsden-Jones, E. M. and Turrill, W. B. (1933) Studies in variation of Anthyllis vulneraria. Journal of Genetics 27, 261-285.
34. Morgan, M. T. and Schoen, D. J. (1997) The role of theory in an emerging new plant reproductive biology. Trends in Ecology and Evolution 12, 231-234.
35. Navarro, L. (1999) Reproductive biology of Anthyllis vulneraria subsp. vulgaris (Fabaceae) in northwestern Iberian Peninsula. Nordic Journal of Botany 19, 281-287.
36. Navarro, L. (2000) Pollination ecology of Anthyllis vulneraria subsp. vulgaris (Fabaceae): nectar robbers as pollinators. American Journal of Botany 87, 980-985.
37. Nei, M. and Li, W. H. (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Science USA 76, 5269-5273.
38. Ohta, T. and Kimura, M. (1973) A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genetic Research 22, 201-204.
39. Pignatti, S. (1982) In Flora D'Italia, Vol. 1, Bologna: Edagricole.
40. Polhill, R. M. (1981) Loteae, Coronilleae. Advances in Legume systematics, part 1 (Polhill, R. M. and Raven, P. H., eds.), Kew, UK: Royal Botanic Gardens, pp.371-374.
41. Powell, W., Morgante, M., Andrè, C., McNicol, J. W., Macharay, G. C., Doyle, J. J., Tingey, S. V., and Rafalski, J. A. (1995) Hypervariable microsatellites provide a general source of polymorphic DNA markers for the chloroplast genome. Current Biology 5, 1023-1029.
42. Powell, W., Morgante, M., McNicol, J. W., Tingey, S. V., and Rafalski, J. A. (1996) Genepool variation in genus Glycine subspecies Soja revealed by polymorphic nuclear and chloroplast microsatellites. Genetics 144, 793-803.
43. Provan, J., Corbett, G., McNicol, J. W., and Powell, W. (1997) Chloroplast DNA variability in wild and cultivated rice (Oryza spp.) revealed by polymorphic chloroplast simple sequence repeats. Genome 40, 104-110.
44. Provan, J., Lawrence, P., Young, G., Wright, F., Bird, R., Paglia, G., Cattonaro, F., Morgante, M., and Powell, W. (1999) Analysis of the genus Zea (Poaceae) using polymorphic chloroplast simple sequence repeats. Plant Systematic and Evolution 218, 245-256.
45. Provan, J., Powell, P., and Hollingsworth, P. M. (2001) Chloroplast microsatellites: new tools for studies in plant ecology and evolution. Trends in Ecology and Evolution 16, 142-147.
46. Ronce, O. and Olivieri I. (1997) Evolution of reproductive effort in a metapopulation with local extinctions and ecological succession. American Nature 150, 220-249.
47. Ronfort, J. and Couvet, D. (1995) A stochastic model of selection on selfing rates in structured populations. Genetic Research 65, 209-222.
48. Sokoloff, D. D. (1998). Morphological and taxonomic study of Anthyllis. Moscow: PhD Thesis.
49. Soltis, P. S. and Soltis, D. E. (1995) Plant molecular systematics: inferences of phylogeny and evolutionary processes. In Evolutionary Biology, Vol. 28 (Hecht, M. K., McIntyre, R. J., and Clegg, M. T., eds.), New York: Plenum Press, pp.139-194.
50. Swofford, D. L., Olsen, G. J., Waddel, P. J., and Hillis, D. M. (1996) Phylogenetic inference. In Molecular Systematics (Hillis, D. M., Moritz, C., and Mable, B. K., eds.), Sunderland, USA: Sinauer Associates, pp.407-514.
51. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
52. Tikhomirov, V. N. and Sokoloff, D. D. (1996) On the genera of Hammatolobium FENZL and Tripodion MEDIK (Papilionaceae, Loteae s.l.). Bulletin of the Moscow Society of Naturalists. Biological Series 101, 61-73.
53. Van de Peer, Y. (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Computational Applications for the Biosciences 10, 596-570.
54. Vendramin, G. G., Lelli, L., Rossi, P., and Morgante, M. (1996) A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae. Molecular Ecology 5, 595-598.
55. Weising, K. and Gardner, R. C. (1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42, 9-19.
56. Yokota, Y., Kawata, T., Iida, Y., Kato, A., and Tanifuji, S. (1989) Nucleotide sequences of the 5.8S RRNA gene and internal transcribed spacer regions in carrot and broad bean ribosomal DNA. Journal of Molecular Evolution 29, 294-301.