An algorithm for analyzing linkages affected by heterozygous translocations: QuadMap

Journal of Heredity

Volumn 97, Issue 1, 2006, Pages 62-66

  Durrant, J D ^a   Gardunia, B W ^b   Livingstone, K D ^c   Stevens, M R ^a   Jellen, E N ^a  

^a BRIGHAM YOUNG UNIVERSITY   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

^c TRINITY UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; COMPUTER PROGRAM; DNA MODIFICATION; GENE MAPPING; GENE TRANSLOCATION; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC LINKAGE; HETEROZYGOSITY; HETEROZYGOTE; PRIORITY JOURNAL;

ALGORITHMS; CHROMOSOME MAPPING; CHROMOSOMES; COMPUTER SIMULATION; HETEROZYGOTE; LINKAGE (GENETICS); SOFTWARE; TRANSLOCATION, GENETIC;

EID: 32244434220     PISSN: 00221503     EISSN: None     Source Type: Journal    
DOI: 10.1093/jhered/esj002     Document Type: Article

References (12)

1. Bourque, G and Pevzner PA, 2002. Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Res 12:26-36.
2. Fox SL, Jellen EN, Kianian SF, Rines HW, and Phillips RL, 2001. Assignment of RFLP linkage groups to chromosomes using monosomic F1 analysis in hexaploid oat. Theor Appl Genet 102:320-326.
3. Green ESP, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, and Newburg L, 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
4. Jellen EN, Gill BS, and Cox TS, 1994. Genomic in situ hybridization differentiates between A/D- and C-genome chromatin and detects intergenomic translocations in polyploid oat species (genus Avena). Genome 37:613-618.
5. Jellen EN, Rines HW, Fox SL, Davis DW, Phillips RL, and Gill BS, 1997. Characterization of 'Sun II' oat monosomics through C-banding and identification of eight new 'Sun II' monosomics. Theor Appl Genet 95:1190-1195.
6. Jellen EN, Rooney WL, and Phillips RL, 1993. Characterization of the hexaploid oat Avena byzantina cv. Kanota monosomic series using C-banding and RFLPs. Genome 36:962-970.
7. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, and Newburg L, 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
8. Livingstone KD, Churchill G, and Jahn MK, 2000. Linkage mapping in populations with karyotypic rearrangements. J Hered 91:423-428.
9. Livingstone KD, Lackney VPC, Blauth JR, Van Wijk R, and Jahn MK, 1999. Genome mapping in Capsicum and the evolution of genome structure in the Solanaceae. Genetics 152:1183-1202.
10. O'Donoughue LS, Kianian SF, Rayapati PJ, Penner GA, Sorrells ME, Tanksley SD, Phillips RL, Rines HW, Lee M, Fedak G, Molnar SJ, Hoffman D, Salas CA, Wu B, Autrique E, and Van Deynze A, 1995. A molecular linkage map of cultivated oat. Genome 38:368-380.
11. Osborn TC, Butrulle DV, Sharpe AG, Pickering KJ, Parkin IAP, Parker JS, and Lydiate DJ, 2003. Detection and effects of a homeologous reciprocal transposition in Brassica napus. Genetics 165:1569-1577.
12. Wight CP, Tinker NA, Kianian SF, Sorrells ME, O'Donoughue LS, Hoffman DL, Groh S, Scoles GJ, Li CD, Webster FH, Phillips RL, Rines HW, Livingston SM, Armstrong KC, Fedak G, and Molnar SJ, 2003. A molecular marker map in 'Kanota' x 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework. Genome 46:28-47.