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Volumn 42, Issue 3, 2006, Pages 179-185

A quantitative evaluation and phylogenetic characterization of oligotrophic denitrifying bacteria harbored in subsurface upland soil using improved culturability

Author keywords

Denitrification; Oligotrophic denitrifying bacteria; Soil biodiversity; Subsurface soil

Indexed keywords

BACTERIUM; DENITRIFICATION; SOIL BIOTA; UPLAND REGION;

EID: 32144449406     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-005-0013-1     Document Type: Article
Times cited : (18)

References (26)
  • 1
    • 2442658111 scopus 로고
    • Denitrifying ability of indigenous strains of Bradyrhizobium japonicum isolated from fields under paddy-upland rotation
    • Asakawa S (1993) Denitrifying ability of indigenous strains of Bradyrhizobium japonicum isolated from fields under paddy-upland rotation. Biol Fertil Soils 15:196-200
    • (1993) Biol Fertil Soils , vol.15 , pp. 196-200
    • Asakawa, S.1
  • 2
    • 0034016758 scopus 로고    scopus 로고
    • Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities
    • Braker G, Zhou J, Wu L, Devol A, Tiedje JM (2000) Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities. Appl Environ Microbiol 66:2096-2104
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2096-2104
    • Braker, G.1    Zhou, J.2    Wu, L.3    Devol, A.4    Tiedje, J.M.5
  • 3
    • 76549256965 scopus 로고
    • Estimation of bacterial densities by means of the "most probable number"
    • Cochran WG (1950) Estimation of bacterial densities by means of the "most probable number". Biometrics 6:105-116
    • (1950) Biometrics , vol.6 , pp. 105-116
    • Cochran, W.G.1
  • 5
    • 0034805765 scopus 로고    scopus 로고
    • Seasonal and vertical changes of denitrification activity and denitrifying bacterial populations in surface and subsurface upland soils with slurry application
    • Hashimoto T, Niimi H (2001) Seasonal and vertical changes of denitrification activity and denitrifying bacterial populations in surface and subsurface upland soils with slurry application. Soil Sci Plant Nutr 47:503-510
    • (2001) Soil Sci Plant Nutr , vol.47 , pp. 503-510
    • Hashimoto, T.1    Niimi, H.2
  • 6
    • 0036129540 scopus 로고    scopus 로고
    • Vertical changes of denitrification activity and denitrifying bacterial populations in Kuroboku upland soil with slurry application
    • Hashimoto T, Niimi H, Asanuma S (2002) Vertical changes of denitrification activity and denitrifying bacterial populations in Kuroboku upland soil with slurry application. Soil Sci Plant Nutr 48:65-69
    • (2002) Soil Sci Plant Nutr , vol.48 , pp. 65-69
    • Hashimoto, T.1    Niimi, H.2    Asanuma, S.3
  • 7
    • 0001984183 scopus 로고
    • Plate count of bacteria in soil on a diluted nutrient broth as a culture medium
    • Hattori T (1976) Plate count of bacteria in soil on a diluted nutrient broth as a culture medium. Rep Inst Agr Tohoku Univ 27:23-30
    • (1976) Rep Inst Agr Tohoku Univ , vol.27 , pp. 23-30
    • Hattori, T.1
  • 8
    • 0018929060 scopus 로고
    • Sensitivity to salts and organic compounds of soil bacteria isolated on diluted media
    • Hattori R, Hattori T (1980) Sensitivity to salts and organic compounds of soil bacteria isolated on diluted media. J Gen Appl Microbiol 26:1-14
    • (1980) J Gen Appl Microbiol , vol.26 , pp. 1-14
    • Hattori, R.1    Hattori, T.2
  • 9
    • 0001136438 scopus 로고    scopus 로고
    • The plate count method. An attempt to delineate the bacterial life in the microhabitat of soil
    • Bollag JM, Stotzky G (eds) Marcel Dekker, New York
    • Hattori R, Hattori T (2000) The plate count method. An attempt to delineate the bacterial life in the microhabitat of soil. In: Bollag JM, Stotzky G (eds) Soil biochemistry 10. Marcel Dekker, New York, pp 271-302
    • (2000) Soil Biochemistry , vol.10 , pp. 271-302
    • Hattori, R.1    Hattori, T.2
  • 10
    • 0025919561 scopus 로고
    • Analysis of bacterial populations in a grassland soil according to rates of development on solid media
    • Kasahara Y, Hattori T (1991) Analysis of bacterial populations in a grassland soil according to rates of development on solid media. FEMS Microbiol Ecol 86:95-102
    • (1991) FEMS Microbiol Ecol , vol.86 , pp. 95-102
    • Kasahara, Y.1    Hattori, T.2
  • 11
    • 0001625406 scopus 로고    scopus 로고
    • Genetic ecology of soybean bradyrhizobia
    • Bollag JM, Stotzky G (eds) Marcel Dekker, New York
    • Minamisawa K, Mitsui H (2000) Genetic ecology of soybean bradyrhizobia. In: Bollag JM, Stotzky G (eds) Soil biochemistry 10. Marcel Dekker, New York, pp 349-377
    • (2000) Soil Biochemistry , vol.10 , pp. 349-377
    • Minamisawa, K.1    Mitsui, H.2
  • 12
    • 0010578742 scopus 로고
    • Bacteria sensitive to nutrient broth medium in terrestrial environments
    • Ohta H, Hattori T (1980) Bacteria sensitive to nutrient broth medium in terrestrial environments. Soil Sci Plant Nutr 26:99-107
    • (1980) Soil Sci Plant Nutr , vol.26 , pp. 99-107
    • Ohta, H.1    Hattori, T.2
  • 13
    • 0021027194 scopus 로고
    • Oligotrophic bacteria on organic debris and plant roots in a paddy field soil
    • Ohta H, Hattori T (1983) Oligotrophic bacteria on organic debris and plant roots in a paddy field soil. Soil Biol Biochem 15:1-8
    • (1983) Soil Biol Biochem , vol.15 , pp. 1-8
    • Ohta, H.1    Hattori, T.2
  • 14
    • 0036203309 scopus 로고    scopus 로고
    • Diversity of nitrite reductase (nirK and NirS) gene fragments in forested upland and wetland soils
    • Prieme A, Braker G, Tiedje JM (2002) Diversity of nitrite reductase (nirK and NirS) gene fragments in forested upland and wetland soils. Appl Environ Microbiol 68:1893-1900
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1893-1900
    • Prieme, A.1    Braker, G.2    Tiedje, J.M.3
  • 15
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saito N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saito, N.1    Nei, M.2
  • 16
    • 0032032181 scopus 로고    scopus 로고
    • Slow-growing and oligotrophic soil bacteria phylogenetically close to Bradyrhizobium japonicum
    • Saito A, Mitsui H, Hattori R, Minamisawa K, Hattori T (1998) Slow-growing and oligotrophic soil bacteria phylogenetically close to Bradyrhizobium japonicum. FEMS Microbiol Ecol 25:277-286
    • (1998) FEMS Microbiol Ecol , vol.25 , pp. 277-286
    • Saito, A.1    Mitsui, H.2    Hattori, R.3    Minamisawa, K.4    Hattori, T.5
  • 17
    • 18744382447 scopus 로고    scopus 로고
    • Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
    • Saito M, Hugenholtz P, Janssen PH (2002) Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol 4:654-666
    • (2002) Environ Microbiol , vol.4 , pp. 654-666
    • Saito, M.1    Hugenholtz, P.2    Janssen, P.H.3
  • 18
    • 0000714082 scopus 로고
    • Effects of nutrient concentration on the growth of soil bacteria
    • Suwa Y, Hattori T (1984) Effects of nutrient concentration on the growth of soil bacteria. Soil Sci Plant Nutr 30:397-403
    • (1984) Soil Sci Plant Nutr , vol.30 , pp. 397-403
    • Suwa, Y.1    Hattori, T.2
  • 19
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 20
    • 4344685944 scopus 로고    scopus 로고
    • Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
    • Throback IN, Enwall K, Jarvis A, Hallin S (2004) Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiol Ecol 49:401-417
    • (2004) FEMS Microbiol Ecol , vol.49 , pp. 401-417
    • Throback, I.N.1    Enwall, K.2    Jarvis, A.3    Hallin, S.4
  • 22
    • 85103230257 scopus 로고
    • Denitrifiers
    • Weaver RW, Angel S, Bottomley P, Bezdicek D, Smith S, Tabatabai A, Wollum A (eds) SSSA, Madison
    • Tiedje JM (1994) Denitrifiers. In: Weaver RW, Angel S, Bottomley P, Bezdicek D, Smith S, Tabatabai A, Wollum A (eds) Methods of soil analysis. Part 2. Microbiological and biochemical properties. SSSA, Madison, pp 245-267
    • (1994) Methods of Soil Analysis. Part 2. Microbiological and Biochemical Properties , pp. 245-267
    • Tiedje, J.M.1
  • 23
    • 0023705262 scopus 로고
    • Oligotrophic bacteria from rendzina forest soil
    • Whang K, Hattori T (1988) Oligotrophic bacteria from rendzina forest soil. Antonie van Leeuwenhoek 54:19-36
    • (1988) Antonie Van Leeuwenhoek , vol.54 , pp. 19-36
    • Whang, K.1    Hattori, T.2
  • 24
    • 0001279038 scopus 로고
    • Preparation of genomic DNA from bacteria
    • Ausubel FM, Brent R, Kingstone RE, More DD, Seidman JG, Smith JA, Struhl K (eds) Wiley, Chichester
    • Wilson K (1990) Preparation of genomic DNA from bacteria. In: Ausubel FM, Brent R, Kingstone RE, More DD, Seidman JG, Smith JA, Struhl K (eds) Current protocols in molecular biology. Wiley, Chichester, pp 2.4.1-2.4.5
    • (1990) Current Protocols in Molecular Biology
    • Wilson, K.1
  • 25
    • 0027101670 scopus 로고
    • Denitrification capacity and denitrification potential of subsurface soils
    • Yeomans JC, Bremner JM, McCarth GW (1992) Denitrification capacity and denitrification potential of subsurface soils. Commun Soil Sci Plant Anal 23:919-927
    • (1992) Commun Soil Sci Plant Anal , vol.23 , pp. 919-927
    • Yeomans, J.C.1    Bremner, J.M.2    McCarth, G.W.3
  • 26
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft WG (1997) Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61:533-616
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 533-616
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.