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Volumn 22, Issue 2, 2006, Pages 129-133

'Protein peeling': An approach for splitting a 3D protein structure into compact fragments

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 32144447952     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti773     Document Type: Article
Times cited : (31)

References (26)
  • 2
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 3
    • 0025277191 scopus 로고
    • The classification and origins of protein folding patterns
    • Chothia,C. and Finkelstein,A.V. (1990) The classification and origins of protein folding patterns. Annu. Rev. Biochem., 59, 1007-1039.
    • (1990) Annu. Rev. Biochem. , vol.59 , pp. 1007-1039
    • Chothia, C.1    Finkelstein, A.V.2
  • 4
    • 0034669774 scopus 로고    scopus 로고
    • Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks
    • de Brevern,A.G. et al. (2000) Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks. Proteins, 41, 271-287.
    • (2000) Proteins , vol.41 , pp. 271-287
    • de Brevern, A.G.1
  • 5
    • 0037433050 scopus 로고    scopus 로고
    • 'Hybrid protein model' for optimally defining 3D protein structure fragments
    • de Brevern,A.G. and Hazout,S. (2003) 'Hybrid protein model' for optimally defining 3D protein structure fragments. Bioinformatics, 19, 345-353.
    • (2003) Bioinformatics , vol.19 , pp. 345-353
    • de Brevern, A.G.1    Hazout, S.2
  • 6
    • 0003845223 scopus 로고    scopus 로고
    • The PyMOL Molecular Graphics System
    • DeLano Scientific, San Carlos, CA, USA
    • DeLano,W.L.T. (2002), The PyMOL Molecular Graphics System. DeLano Scientific, San Carlos, CA, USA.
    • (2002)
    • DeLano, W.L.T.1
  • 7
    • 0027949057 scopus 로고
    • Common structural motifs in small proteins and domains
    • Efimov,A.V. (1994) Common structural motifs in small proteins and domains. FEBS Let., 355, 213-219.
    • (1994) FEBS Let. , vol.355 , pp. 213-219
    • Efimov, A.V.1
  • 8
    • 0030910802 scopus 로고    scopus 로고
    • Structural trees for protein superfamilies
    • Efimov,A.V. (1997) Structural trees for protein superfamilies. Proteins, 28, 241-260.
    • (1997) Proteins , vol.28 , pp. 241-260
    • Efimov, A.V.1
  • 9
    • 18844454820 scopus 로고    scopus 로고
    • A structural alphabet for local protein structures: Improved prediction methods
    • Etchebest,C. et al. (2005) A structural alphabet for local protein structures: Improved prediction methods. Proteins, 59, 810-827.
    • (2005) Proteins , vol.59 , pp. 810-827
    • Etchebest, C.1
  • 10
    • 0345864014 scopus 로고    scopus 로고
    • The KNOTTIN website and database: A new information system dedicated to the knottin scaffold
    • Gelly,J.C. et al. (2004) The KNOTTIN website and database: A new information system dedicated to the knottin scaffold. Nucleic Acids Res., 32, D156-159.
    • (2004) Nucleic Acids Res. , vol.32
    • Gelly, J.C.1
  • 11
    • 0019860994 scopus 로고
    • Correlation of DNA exonic regions with protein structural units in haemoglobin
    • Go,M. (1981) Correlation of DNA exonic regions with protein structural units in haemoglobin. Nature, 291, 90-92.
    • (1981) Nature , vol.291 , pp. 90-92
    • Go, M.1
  • 12
    • 0037324306 scopus 로고    scopus 로고
    • Improving the performance of DomainParser for structural domain partition using neural network
    • Guo,J.T. et al. (2003) Improving the performance of DomainParser for structural domain partition using neural network. Nucleic Acids Res., 31, 944-952.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 944-952
    • Guo, J.T.1
  • 13
    • 0037907566 scopus 로고    scopus 로고
    • Reducing the computational complexity of protein folding via fragment folding and assembly
    • Haspel,N. (2003) Reducing the computational complexity of protein folding via fragment folding and assembly. Protein Sci., 12, 1177-1187.
    • (2003) Protein Sci. , vol.12 , pp. 1177-1187
    • Haspel, N.1
  • 14
    • 2942552020 scopus 로고    scopus 로고
    • Protein structure prediction via combinatorial assembly of sub-structural units
    • Inbar,Y. et al. (2003) Protein structure prediction via combinatorial assembly of sub-structural units. Bioinformatics, 19(Suppl. 1), i158-168.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Inbar, Y.1
  • 15
    • 0020655246 scopus 로고
    • Structural domains in proteins and their role in the dynamics of protein function
    • Janin,J. and Wodak,S.J. (1983) Structural domains in proteins and their role in the dynamics of protein function. Prog. Biophys. Mol. Biol., 42, 21-78.
    • (1983) Prog. Biophys. Mol. Biol. , vol.42 , pp. 21-78
    • Janin, J.1    Wodak, S.J.2
  • 16
  • 17
    • 0000557828 scopus 로고
    • X-ray crystallographic studies of proteins
    • Matthews,B.W. (1976) X-ray crystallographic studies of proteins. Annu. Rev. Phys. Chem., 27, 493-523.
    • (1976) Annu. Rev. Phys. Chem. , vol.27 , pp. 493-523
    • Matthews, B.W.1
  • 18
    • 0346494932 scopus 로고    scopus 로고
    • TOPS: An enhanced database of protein structural topology
    • Michalopoulos,I. et al. (2004) TOPS: An enhanced database of protein structural topology. Nucleic Acids Res., 32, D251-254.
    • (2004) Nucleic Acids Res. , vol.32
    • Michalopoulos, I.1
  • 19
    • 0029922493 scopus 로고    scopus 로고
    • Foldons, protein structural modules, and exons
    • Panchenko,A.R. et al. (1996) Foldons, protein structural modules, and exons. Proc. Natl Acad. Sci. USA, 93, 2008-2013.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 2008-2013
    • Panchenko, A.R.1
  • 20
    • 23144453476 scopus 로고    scopus 로고
    • DIAL: A web-based server for the automatic identification of structural domains in proteins
    • Pugalenthi,G. et al. (2005) DIAL: A web-based server for the automatic identification of structural domains in proteins. Nucleic Acids Res., 33, W130-132.
    • (2005) Nucleic Acids Res. , vol.33
    • Pugalenthi, G.1
  • 21
    • 0019443447 scopus 로고
    • The anatomy and taxonomy of protein structure
    • Richardson,J.S. (1981) The anatomy and taxonomy of protein structure. Adv. Protein Chem., 34, 167-339.
    • (1981) Adv. Protein Chem. , vol.34 , pp. 167-339
    • Richardson, J.S.1
  • 22
    • 0035793103 scopus 로고    scopus 로고
    • An amino acid code for protein folding
    • Rumbley,J. et al. (2001) An amino acid code for protein folding. Proc. Natl Acad. Sci. USA, 98, 105-112.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 105-112
    • Rumbley, J.1
  • 23
    • 0027339355 scopus 로고
    • Accommodating sequence changes in beta-hairpins in proteins
    • Sibanda,B.L. and Thornton,J.M. (1993) Accommodating sequence changes in beta-hairpins in proteins. J. Mol. Biol., 229, 428-447.
    • (1993) J. Mol. Biol. , vol.229 , pp. 428-447
    • Sibanda, B.L.1    Thornton, J.M.2
  • 24
    • 0028914725 scopus 로고
    • An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins
    • Sowdhamini,R. and Blundell,T.L. (1995) An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins. Protein. Sci., 4, 506-520.
    • (1995) Protein. Sci. , vol.4 , pp. 506-520
    • Sowdhamini, R.1    Blundell, T.L.2
  • 25
    • 0031012563 scopus 로고    scopus 로고
    • Hydrophobic folding units derived from dissimilar monomer structures and their interactions
    • Tsai,C.J. and Nussinov,R. (1997) Hydrophobic folding units derived from dissimilar monomer structures and their interactions. Protein Sci., 6, 24-42.
    • (1997) Protein Sci. , vol.6 , pp. 24-42
    • Tsai, C.J.1    Nussinov, R.2
  • 26
    • 0043180474 scopus 로고    scopus 로고
    • PISCES: A protein sequence culling server
    • Wang,G. and Dunbrack,R.L.,Jr (2003) PISCES: A protein sequence culling server. Bioinformatics, 19, 1589-1591.
    • (2003) Bioinformatics , vol.19 , pp. 1589-1591
    • Wang, G.1    Dunbrack Jr., R.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.