Genetic variability of gag and env regions of HIV type 1 strains circulating in Slovenia

AIDS Research and Human Retroviruses

Volumn 22, Issue 1, 2006, Pages 109-113

  Mezei, Mária ^a   Balog, Katalin ^a   Babič, Dunja Z ^b   Tóth, Gábor ^c   Cech, Gábor ^d   Vajna, Balázs ^d   Tauber, Tamás ^d   Seme, Katja ^b   Tomažič, Janez ^e   Vidmar, Ludvik ^e   Poljak, Mario ^b   Minárovits, János ^a  

^a NATIONAL CENTER FOR EPIDEMIOLOGY   (Hungary)

^b UNIVERSITY OF LJUBLJANA   (Slovenia)

^c SZENT ISTVÁN UNIVERSITY   (Hungary)

^d EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^e UNIVERSITY MEDICAL CENTRE LJUBLJANA   (Slovenia)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ADULT; ARTICLE; CLINICAL ARTICLE; ENVELOPE GENE; ENZYME IMMUNOASSAY; EPIDEMIC; FEMALE; GENETIC VARIABILITY; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTED PATIENT; MALE; NUCLEOTIDE SEQUENCE; PERIPHERAL BLOOD MONONUCLEAR CELL; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROVIRUS; SEQUENCE ANALYSIS; SLOVENIA; STRUCTURAL GENE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; VIRUS TRANSMISSION;

AMINO ACID SEQUENCE; GENE PRODUCTS, GAG; GENES, ENV; HIV INFECTIONS; HIV-1; MOLECULAR SEQUENCE DATA; PHYLOGENY; SLOVENIA; VARIATION (GENETICS);

EID: 32044446910     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/aid.2006.22.109     Document Type: Article

References (20)

1. Gao F, Bailes E, Robertson DL, et al.: Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes. Nature 1999;397:436-441.
2. McCutchan FE: Understanding the genetic diversity of HIV-1. AIDS 2000;14:S31-44.
3. Peeters M and Sharp PM: Genetic diversity of HIV-1: The moving target. AIDS 2000;14:S129-140.
4. Robertson DL, Anderson JP, Bradac JA, et al.: HIV-1 nomenclature proposal. In: Human Retroviruses and AIDS 1999: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences (Kuiken CI, Foley BT, Hahn BH, et al, eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 1999, pp. 492-505.
5. Gao F, Vidal N, Li Y, et al.: Evidence of two distinct subsubtypes within the HIV-1 subtype A radiation. AIDS Res Hum Retroviruses 2001;17:675-688.
6. Bebenek K, Abbotts J, Roberts JD, Wilson SH, and Kunkel TA: Specificity and mechanism of error-prone replication by human immunodeficiency virus-1 reverse transcriptase. J Biol Chem 1989;264:16948-16956.
7. Robertson DL, Sharp PM, McCutchan FE, and Hahn BH: Recombination in HIV-1. Nature 1995;374:124-126.
8. HIV Database: http://hiv-web.lanl.gov/.
9. Klavs I and Poljak M: Unlinked anonymous monitoring of human immunodeficiency virus prevalance in high- and low-risk groups in Slovenia, 1993-2002. Croat Med J 2003;44:545-549.
10. Poljak M, Seme K, Marin IJ, et al.: Seroprevalence of HIV-1 sub-types A-E among HIV-1 infected individuals from Slovenia. Pflugers Arch Eur J Physiol 2000;439(Suppl):R45-46.
11. Maniatis T, Fritsh EF, and Sambrook J: Purification of nucleic acids. In: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1982, pp. 458-459.
12. Delwart EL, Shpaer EG, Louwagie J, et al.: Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes. Science 1993;262:1257-1261.
13. Sanders-Buell E, Salminen MO, and McCutchan FE: Sequencing Primers for HIV-1. Los Alamos National Laboratory, Los Alamos, NM, 1995.
14. Thompson JD, Higgins DG, and Gibson TJ: CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
15. Felsenstein J: PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, WA, 2004.
16. Vasil S, Thakallapally R, Korber B, and Foley B: Global variation in the HIV-1 V3 region. In: Human Retroviruses and AIDS 1998: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences (Korber B, Kuiken C, Foley B, et al., eds.). Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, 1998, pp. III118-III265.
17. Xiao L, Owen SM, Goldman I, et al.: CCR5 coreceptor usage of non-syncytium-inducing primary HIV-1 is independent of phylogenetically distinct global isolates: Delineation of consensus motif in the V3 domain that predicts CCR5-usage. Virology 1998;240:83-92.
18. De Jong JJ, De Ronde A, Keulen W, Tersmette M, and Goudsmit J: Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: Analysis by single amino acid substitution. J Virol 1992;66:6777-6780.
19. Kim FM, Kolson DL, Balliet JW, Srinivasan A, and Collman RG: V3-independent determinants of macrophage tropism in a primary human immunodeficiency virus type 1 isolate. J Virol 1995;69:1755-1761.
20. http://bioweb.pasteur.fr/seqanal/interfaces/pepstats.html/.