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Volumn 366, Issue 1, 2006, Pages 104-108

Using the transcriptome to annotate the genome revisited: Application of massively parallel signature sequencing (MPSS)

Author keywords

Gene model; Open reading frame; RNA signature sequence; Theileria parva; Transcription

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTOME;

EID: 32044441048     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.08.011     Document Type: Article
Times cited : (9)

References (20)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • S.F. Altschul Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 0034130561 scopus 로고    scopus 로고
    • Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
    • S. Brenner Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays Nat. Biotechnol. 18 2000 630 634
    • (2000) Nat. Biotechnol. , vol.18 , pp. 630-634
    • Brenner, S.1
  • 3
    • 0015694845 scopus 로고
    • Letter: Infection and transformation of bovine lymphoid cells in vitro by infective particles of Theileria parva
    • C.G. Brown, D.A. Stagg, R.E. Purnell, G.K. Kanhai, and R.C. Payne Letter: infection and transformation of bovine lymphoid cells in vitro by infective particles of Theileria parva Nature 245 1973 101 103
    • (1973) Nature , vol.245 , pp. 101-103
    • Brown, C.G.1    Stagg, D.A.2    Purnell, R.E.3    Kanhai, G.K.4    Payne, R.C.5
  • 4
  • 6
    • 21644437935 scopus 로고    scopus 로고
    • Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes
    • M.J. Gardner Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes Science 309 2005 134 137
    • (2005) Science , vol.309 , pp. 134-137
    • Gardner, M.J.1
  • 7
    • 0033039498 scopus 로고    scopus 로고
    • Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays
    • J.G. Hacia Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays Nat. Genet. 22 1999 164 167
    • (1999) Nat. Genet. , vol.22 , pp. 164-167
    • Hacia, J.G.1
  • 8
    • 2942553957 scopus 로고    scopus 로고
    • The use of MPSS for whole-genome transcriptional analysis in Arabidopsis
    • B.C. Meyers The use of MPSS for whole-genome transcriptional analysis in Arabidopsis Genome Res. 14 2004 1614 1653
    • (2004) Genome Res. , vol.14 , pp. 1614-1653
    • Meyers, B.C.1
  • 9
    • 3543007130 scopus 로고    scopus 로고
    • Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing
    • B.C. Meyers Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing Nat. Biotechnol. 22 2004 1006 1011
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1006-1011
    • Meyers, B.C.1
  • 10
    • 0029018565 scopus 로고
    • Generation and characterization of cloned Theileria parva parasites
    • S.P. Morzaria, T.T. Dolan, R.A. Norval, R.P. Bishop, and P.R. Spooner Generation and characterization of cloned Theileria parva parasites Parasitology 111 Pt 1 1995 39 49
    • (1995) Parasitology , vol.111 , Issue.1 PART , pp. 39-49
    • Morzaria, S.P.1    Dolan, T.T.2    Norval, R.A.3    Bishop, R.P.4    Spooner, P.R.5
  • 11
    • 0034020282 scopus 로고    scopus 로고
    • Theileria parva genomics reveals an atypical apicomplexan genome
    • V. Nene Theileria parva genomics reveals an atypical apicomplexan genome Int. J. Parasitol. 30 2000 465 474
    • (2000) Int. J. Parasitol. , vol.30 , pp. 465-474
    • Nene, V.1
  • 13
    • 21644452778 scopus 로고    scopus 로고
    • Genome of the host-cell transforming parasite Theileria annulata compared with T. parva
    • A. Pain Genome of the host-cell transforming parasite Theileria annulata compared with T. parva Science 309 2005 131 133
    • (2005) Science , vol.309 , pp. 131-133
    • Pain, A.1
  • 14
    • 0034594894 scopus 로고    scopus 로고
    • Finding genes in Plasmodium falciparum
    • M. Pertea, S.L. Salzberg, and M.J. Gardner Finding genes in Plasmodium falciparum Nature 404 2000 34 35
    • (2000) Nature , vol.404 , pp. 34-35
    • Pertea, M.1    Salzberg, S.L.2    Gardner, M.J.3
  • 15
    • 3242875708 scopus 로고    scopus 로고
    • Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms
    • J. Reinartz Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms Brief. Funct. Genomic. Proteomic. 1 2002 95 104
    • (2002) Brief. Funct. Genomic. Proteomic. , vol.1 , pp. 95-104
    • Reinartz, J.1
  • 16
    • 0033635022 scopus 로고    scopus 로고
    • Artemis: Sequence visualization and annotation
    • K. Rutherford Artemis: sequence visualization and annotation Bioinformatics 16 2000 944 945
    • (2000) Bioinformatics , vol.16 , pp. 944-945
    • Rutherford, K.1
  • 17
    • 0036246030 scopus 로고    scopus 로고
    • Using the transcriptome to annotate the genome
    • S. Saha Using the transcriptome to annotate the genome Nat. Biotechnol. 20 2002 508 512
    • (2002) Nat. Biotechnol. , vol.20 , pp. 508-512
    • Saha, S.1
  • 19
    • 0346595188 scopus 로고
    • Origin of eukaryotic introns: A hypothesis, based on codon distribution statistics in genes, and its implications
    • P. Senapathy Origin of eukaryotic introns: a hypothesis, based on codon distribution statistics in genes, and its implications Proc. Natl. Acad. Sci. U. S. A. 83 1986 2133 2137
    • (1986) Proc. Natl. Acad. Sci. U. S. A. , vol.83 , pp. 2133-2137
    • Senapathy, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.