Cytochrome c and bioenergetic hypothetical model for alkaliphilic Bacillus spp.

Journal of Bioscience and Bioengineering

Volumn 100, Issue 4, 2005, Pages 365-379

  Goto, Toshitaka ^a,b   Matsuno, Toshihide ^a,c   Hishinuma Narisawa, Megumi ^a   Yamazaki, Koji ^b   Matsuyama, Hidetoshi ^c   Inoue, Norio ^b   Yumoto, Isao ^a,b  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b HOKKAIDO UNIVERSITY   (Japan)

^c TOKAI UNIVERSITY   (Japan)

Author keywords

Alkaline adaptation; Alkaliphilic; Bacillus; Cytochrome c; H + condenser; Ion capacity; Membrane electrical potential; Redox potential

Indexed keywords

BACTERIA; PH EFFECTS; REDOX REACTIONS;

BIOENERGETIC PARAMETERS; REDOX POTENTIAL; SURFACE MEMBRANES;

BIOMEDICAL ENGINEERING;

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; CYTOCHROME A; CYTOCHROME C; CYTOCHROME C OXIDASE;

ALKALINITY; BACILLUS SUBTILIS; BACTERIAL GROWTH; BIOENERGY; CELL PH; ELECTRON TRANSPORT; ENERGY YIELD; GROWTH RATE; HYDROGEN BOND; HYPOTHESIS; INTRACELLULAR MEMBRANE; ION TRANSPORT; MEMBRANE POTENTIAL; NONHUMAN; PARAMETER; PH MEASUREMENT; PROTEIN ISOLATION; PROTON TRANSPORT; REVIEW; TAXONOMY;

BACILLUS (BACTERIUM); BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 31844441329     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1263/jbb.100.365     Document Type: Article

References (133)

1. Horikoshi K. General view of alkaliphilic termophiles Horikoshi K. Grant W.D. Superbugs, microorganisms in extreme environment 1991 Springer-Verlag Berlin 3 14
2. Horikoshi K., Grant W.D. Extremophiles, microbial life in extreme environments 1998 Wiley-Liss, John Wiley & Sons New York
3. Horikoshi K., Akiba T. Alkaliphilic microorganisms. A new microbial world 1982 Spronger-Verlag Berlin Germany
4. Takahara Y., Tanabe O. Studies on the reduction of indigo in industrial fermentation vat (VII) J. Ferment. Technol. 38 1960 329 331
5. Duckworth A.W., Grant W.D., Jones B.E., van Steenbergen R. Phylogenetic diversity of soda lake alkaliphiles FEMS Microbiol. Ecol. 117 1996 61 65
6. Takami H., Inoue A., Fujii F., Horikoshi K. Microbial flora in the deepest sea mud of the Mariana Trench FEMS Microbiol. Lett. 152 1997 279 285
7. Thongara T., Kosono S., Ohkuma M., Hongoh Y., Kitada M., Yoshinaka T., Trakulnaleamsai S., Noparatnaraporn N., Kudo T. Gut of higher termites as a niche for alkakiphiles as shown by culture-based and culture-independent studies Microbs Environ. 18 2003 152 159
8. Ohta K., Kiyomiya A., Koyama N., Nosoh Y. The basis of the alkalophilic property of a species of Bacillus J. Gen. Microbiol. 86 1975 259 266
9. Krulwich T.A., Guffanti A.A. Alkalophilic bacteria Annu. Rev. Microbiol. 43 1989 435 463
10. Krulwich T.A., Ito M., Gilmour R., Hicks D.B., Guffanti A.A. Energetics of alkaliphilic Bacillus species: physiology and molecules Adv. Microb. Physiol. 40 1998 401 438
11. Krulwich T.A., Ito M., Gilmour R., Guffanti A.A. Mechanisms of cytoplasmic pH regulation in alkaliphilic strains of Bacillus Extremophiles 1 1997 163 169
12. + antiporter of alkaliphilic Bacillus sp. Extremophiles 4 2000 253 258
13. Yumoto I. Bioenergetics of alkaliphilic Bacillus spp. J. Biosci. Bioeng. 93 2002 342 353
14. Yumoto I. Electron transport system in alkaliphilic Bacillus spp. Recent Res. Dev. Bacteriol. 1 2003 131 149
15. Mitchell P. Coupling of phosphorylation to electron and hydrogen transfer by a chemiosmotic type of mechanism Nature 191 1961 144 148
16. i-loaded membrane vesicles from alkaliphilic Bacillus firmus OF4 J. Biol. Chem. 269 1994 21576 21582
17. Nielsen P., Rainey F.A., Outtrup H., Priest F.G., Fritze D. Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of sixth rRNA group within the genus Bacillus FEMS Microbiol. Lett. 177 1994 61 66
18. Nielsen P., Fritze D., Priest F.G. Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species Microbiology 141 1995 1745 1761
19. Vedder A. Bacillus alcalophilus n. sp.; benevens enkele ervaringen met sterk alcalischevoedingbodems Antonie van Leeuwenhoek J. Microbiol. Serol. 1 1934 143 147
20. Spanka R., Fritze D. Bacillus cohnii sp. nov., new, obligately alkaliphilic, oval-spore-forming Bacillus species with ornithine and aspartic acid instead of diaminopimeric acid in the cell wall Int. J. Syst. Bacteriol. 43 1993 150 156
21. Agnew M.D., Koval S.F., Jarrell K.F. Isolation and characterization of novel alkaliphiles from bauxite-processing waste and description of Bacillus vedderi sp. nov., a new obligate alkaliphile Syst. Appl. Microbiol. 18 1995 221 230
22. Fritze D. Bacillus haloalkaliphilus sp. nov. Int. J. Syst. Bacteriol. 46 1996 98 101
23. Switzer Blum J., Burns Bindi A., Buzzelli J., Stolz J.F., Oremland R.S. Bacillus arsenicoselenatis, sp. nov., and Bacillus selenitireducence, sp. nov.: two haloalkaliphiles from Mono Lake, California that respire oxyanions of selenium and arsenic Arch. Microbiol. 171 1998 19 30
24. Yumoto I., Yamazaki K., Sawabe T., Nakano K., Kawasaki K., Ezura Y., Shinano H. Bacillus horti sp. nov., a new gram-negative alkaliphilic bacillus Int. J. Syst. Bacteriol. 48 1998 565 571
25. Yumoto I., Yamaga S., Sogabe Y., Nodasaka Y., Matsuyama H., Nakajima K., Suemori A. Bacillus krulwichae sp. nov., a halotolerant obligate alkaliphile that utilizes benzoate and m-hydroxybenzoate Int. J. Syst. Evol. Microbiol. 53 2003 1531 1536
26. Olivera N., Siñeriz F., Breccia J.D. Bacillus patagoniensis sp. nov., a novel alkalitolerant bacterium from Atriplex lampa rhizosphere, Patagonia, Argentina Int. J. Syst. Evol. Microbiol. 55 2005 443 447
27. Vargas V.A., Delgado O.D., Hatti-Kaul R., Mattiasson B. Bacillus bogoriensis sp. nov., a new alkaliphilic halotolerant member of the genus Bacillus isolated from a Kenyan soda lake Int. J. Syst. Evol. Microbiol. 55 2005 899 902
28. Yumoto I., Hirota K., Goto T., Nodasaka Y., Nakajima K. Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alkaliphile Int. J. Syst. Evol. Microbiol. 55 2005 935 939
29. Yumoto I., Hirota K., Kawahara T., Nodasaka Y., Okuyama H., Matsuyama H., Yokota Y., Nakajima K., Hoshino T. Anoxybacillus voinovskiensis sp. nov., a moderately thermophilic bacterium from a hot spring in Kamchatka Int. J. Syst. Evol. Microbiol. 54 2004 1239 1242
30. Nakajima K., Hirota K., Nodasaka Y., Yumoto I. Alkalibacterium iburiense sp. nov., an obligate alkaliphile that reduces an indigo dye Int. J. Syst. Evol. Microbiol. 55 2005 1525 1530
31. Yumoto I., Hirota K., Nodasaka Y., Nakajima K. Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus Int. J. Syst. Evol. Microbiol. 55 2005 1521 1524
32. +-dependence of alkaliphily in Bacillus Biochim. Biophys. Acta 1501 2001 158 168
33. + antiporter system of alkalophilic Bacillus species strain C-125 Mol. Microbiol. 14 1994 939 946
34. Ito M., Hicks D.B., Henkin T.M., Guffanti A.A., Powers B.D., Zvi L., Uematsu K., Krulwich T.A. MotPS is the stator-force generator for motility of alkalipilic Bacillus, and its homologue is a second functional Mot in Bacillus subtilis Mol. Microbiol. 53 2004 1035 1049
35. Guffanti A.A., Hicks D.B. Molar growth yield and bioenergetic parameters of extremely alkaliphilic Bacillus species in batch cultures, and growth in a chemostat at pH 10.5 Microbiology 137 1991 2375 2379
36. Lewis R.J., Krulwich T.A., Reynafarje B., Lehninger A.L. Respiration-dependent proton translocation in alkalophilic Bacillus firmus RAB and its non-alkalophilic mutant derivative J. Biol. Chem. 258 1983 2109 2111
37. Krulwich T.A. Alkalipiles: 'basic' molecular problems of pH tolerance and bioenergetics Mol. Microbiol. 15 1995 403 410
38. Qiu Z.-H., Yu L., Yu C.-A. Spin-label electron paramagnetic resonance and differential scanning calorimetry studies of the interaction between mitochondrial cytochrome c oxidase and adenosine triphospate synthase complex Biochemistry 31 1992 3297 3302
39. +-migration along the membrane surface as revealed by double patch-clamp experiments FEBS Lett. 429 1998 197 200
40. Scherrer P., Alexiev U., Marti T., Khorana H.G., Heyn M.P. Covalently bound pH-indicator dyes at selected extracellular or cytoplasmic sites in bacteriorhodopsin. 1. Proton migration along the surface of bacteriorhodopsin micelles and delayed transfer from surface to bulk Biochemistry 33 1994 13684 13692
41. Alexiev U., Marti T., Heyn M.P., Khorana H.G., Scherrer P. Covalently bound pH-indicator dyes at selected extracellular or cytoplasmic sites in bacteriorhodopsin. 2. Rotational orientation of helices D and E and kinetic correlation between M formation and proton release in bacteriorhodopsin micelles Biochemistry 33 1994 13693 13699
42. Gutoman M., Nachiel E. The dynamic of proton exchange between bulk and surface group Biochim. Biophys. Acta 1231 1995 123 138
43. Marantz Y., Einarsdottir O., Nachliel E., Gutman M. Proton-collecting properties of bovine heart cytochrome c oxidase: kinetic and electrostatic analysis Biochemistry 40 2001 15086 15097
44. Georgievskii Y., Medvedev E.S., Stuchebrukhov A.A. Proton transport via the membrane surface Biophys. J. 82 2002 2833 2846
45. Georgievskii Y., Medvedev E.S., Stuchebrukhov A.A. Proton transport via coupled surface and bulk diffusion J. Chem. Phys. 116 2002 1692 1699
46. Haines T.H., Dencher N.A. Cardiolipin: a proton trap for oxidative phosphorylation FEBS Lett. 528 2002 35 39
47. Cherepanov D., Feniouk B.A., Junge W., Mulkidjanian A.Y. Low dielectric of water at the membrane interface: effect on the energy coupling mechanisms in biological membranes Biophys. J. 85 2003 1307 1316
48. Marantz Y., Nachliel E., Aagaard A., Brezezinski P., Gutman M. The proton collecting function of the inner surface of cytochrome c oxidase from Rhodobacter sphaeroides Proc. Natl. Acad. Sci. USA 95 1998 8590 8595
49. Shioi J.-I., Matsuura S., Imae Y. Quantitative measurements of proton motive force and motility in Bacillus subtilis J. Bacteriol. 144 1980 891 897
50. Hornbæk T., Jakobsen M., Dynesen J., Nielsen A.K. Global transcription profiles and intracellular pH regulation measured in Bacillus licheniformis upon external pH upshifts Arch. Microbiol. 182 2004 467 474
51. Molenaar D., Abee T., Konings W.N. Continuous measurement of the cytoplasmic pH in Lactococcus lactic with a fluorescent pH indicator Biochim. Biophys. Acta 1115 1991 75 83
52. + inflagellar rotation and amino acid transport in a facultatively alkalophilic Bacillus Biochim. Biophys. Acta 852 1986 38 45
53. Sturr M.G., Guffanti A.A., Krulwich T.A. Growth and bioenergetic of alkaliphilic Bacillus firmus OF4 in continuous culture at high pH J. Bacteriol. 176 1994 3111 3116
54. + contents of the incubation medium J. Bacteriol. 152 1982 1096 1104
55. Hoffmann A., Dimroth P. The electrochemical proton potential of Bacillus alcalophilus Eur. J. Biochem. 201 1991 467 473
56. 3 oxidase it encodes J. Biol. Chem. 268 1993 678 685
57. Yumoto I., Yamazaki K., Hishinuma M., Nodasaka Y., Inoue N., Kawasaki K. Identification of facultatively alkaliphilic Bacillus sp. strain YN-2000 and its fatty acid composition and cell-surface aspects depending on culture pH Extremophiles 4 2000 285 290
58. Qureshi M.H., Yumoto I., Fujiwara T., Fukumori Y., Yamanaka T. A novel aco-type cytochrome-c oxidase from a facultative alkalophilic Bacillus: purification, and some molecular and enzymatic features J. Biochem. 107 1990 480 485
59. Orii Y., Yumoto I., Fukumori Y., Yamanaka T. Stopped-flow and Rapid-scan studies of the redox behavior of cytochrome aco from facultative alkalophilic Bacillus J. Biol. Chem. 266 1991 14310 14316
60. 3-type cytochrome c oxidase from facultative alkalophilic Bacillus J. Biochem. 114 1993 88 95
61. Sone N., Ogura T., Noguchi S., Kitagawa T. Proton pumping activity and visible absorption and resonance Raman spectra of a cao-type cytochrome c oxidase isolated from the thermophilic bacterium Bacillus PS3 Biochemistry 33 1994 849 855
62. 3-type terminal oxidase of a thermophilic bacterium. Purification, properties and proton pumping Biochim. Biophys. Acta 682 1982 216 226
63. + J. Biol. Chem. 265 1990 20547 20554
64. Hoffmann A., Dimroth P. The ATPase of Bacillus alcalophilus. Reconstitution of energy-transducing function Eur. J. Biochem. 196 1991 493 497
65. Wang Z., Hicks D.B., Guffanti A.A., Baldwin K., Krulwich T.A. Replacement of amino acid sequence features of a- and c-subunits of ATP synthases of alkaliphilic Bacillus with Bacillus consensus sequence results in defective oxidative phosphorylation and non-fermetative growth at pH 10.5 J. Biol. Chem. 297 2004 26546 26554
66. Higashibata A., Fujiwara T., Fukumori Y. Studies on the respiratory system in alkaliphilic Bacillus; a proposed new respiratory mechanism Extremophiles 2 1998 83 92
67. Yumoto I., Fukumori Y., Yamanaka T. Purification and characterization of catalase from a facultative alkalophilic Bacillus J. Biochem. 108 1990 583 587
68. Pettigrew G.W., Moore G.R. Cytochromes c biological aspects 1987 Springer-Verlag Berlin
69. Moore G.R., Pettigrew G.W. Cytochrome c evolutionary, structural and physicochemical aspects 1990 Springer-Verlag Berlin
70. Yamanaka T. The biochemistry of bacterial cytochromes 1992 Japan Scientific Society Press Tokyo 91 168
71. Brayer G.D., Murphy M.P. Structural studies of eukaryotic cytochromes c Scott R.A. Mauk A.G. Cytochrome c A multidisciplinary approach 1996 University Science Books Sausalio, CA 103 166
72. Von Wachenfeldt C., Hederstedt L. Bacillus subtilis 13-kilodalton cytochrome c-550 encoded by cccA consists of a membrane-anchor and a heme domain J. Biol. Chem. 265 1990 13939 13948
73. Bengtsson J., Rivolta C., Hederstedt L., Karamata D. Bacillus subtilis contains two small c-type cytocheome with homologous heme domains but different type of membrane anchors J. Biol. Chem. 274 1999 26179 26184
74. Von Wachenfeldt C., Hederstedt L. Physico-chemical characterisation of membrane-bound and water-soluble forms of Bacillus subtilis cytochrome c-550 Eur. J. Biochem. 212 1993 499 509
75. Sone N., Kutoh E., Yanagita Y. Cytochrome c-551 from the thermophilic bacterium PS3 grown under air-limited condition Biochim. Biophys. Acta 977 1989 329 334
76. 553 form Heliobacterium gestii: gene sequence and characterization of mature protein Biochemistry 37 1998 9001 9008
77. Vandenberghe I.H.M., Guisez Y., Ciurli S., Benini S., van Beeumen J.J. Cytochrome c-553 from the alkalophilic bacterium Bacillus pasteurii has the primary structure characteristics of a lipoprotein Biochem. Biophys. Res. Commun. 264 1999 329 334
78. 3 oxidase in clinically relevant proteobacteria? Trends Microbiol. 8 2000 542 543
79. 3 oxidase and bacterial microaerobic metabolism Biochem. Soc. Trans. 30 2002 653 658
80. 3 oxidase Biochim. Biophys. Acta 1655 2004 388 399
81. Lewis R.J., Belkina S., Krulwich T.A. Alkalophiles have much higher cytochrome contents than conventional bacteria and their own non-alkalophilic mutant derivatives Biochem. Biophys. Res. Commun. 95 1980 857 867
82. Guffanti A.A., Finkelthal O., Hick D.B., Falk L., Sidhu A., Garro A., Krulwich T.A. Isolation and characterization of new facultatively alkalipholic strains of Bacillus species J. Bacteriol. 167 1986 766 773
83. Yumoto I., Nakajima K., Ikeda K. Comparative study on cytochrome content of alkaliphilic Bacillus strains J. Ferment. Bioeng. 83 1997 466 469
84. Davidson M.W., Gray K.A., Knaff D.B., Krulwich T.A. Purification and characterization of two soluble cytochromes from the alkalophilic Bacillus firmus RAB Biochim. Biophys. Acta 933 1988 470 477
85. Larsen R.W., Chavez M.D., Nunez D.J., Davidson M.W., Knaff D.B., Krulwich T.A., Ondrias M.I. Resonance Raman investigation of a soluble cytochrome c522 from alkaliphilic Bacillus firmus RAB Arch. Biochem. Biophys. 283 1990 266 270
86. 553 reduction potential by structural and solutionparameters J. Biol. Inorg. Chem. 3 1998 371 382
87. Benini S., Ciurli S., Rypnjewski W., Wilson K.S. Crystals of cytochrome c-553 from Bacillus pasteurii show diffraction to 0.97 Å resolution Proteins 28 1997 580 585
88. 553 at 0.97-Å resolution Biochemistry 39 2000 13115 13126
89. Bartalesi I., Bertini I., Rosato A. Structure and dynamics of reduced Bacillus pasteurii cytochrome c: oxidation state dependent properties and implication for electron transfer processes Biochemistry 42 2003 739 745
90. Woolley K.J. The c-type cytochromes of the gram-positive bacterium Bacillus licheniformis Arch. Biochem. Biophys. 245 1987 376 379
91. Fujiwara Y., Oka M., Hamamoto T., Sone N. Cytochrome c-551 of the thermophilic bacterium PS3. DNA sequence and analysis of mature cytochrome Biochim. Biophys. Acta 1141 1993 213 219
92. Horio T., Higashi T., Sasagawa M., Kusai K., Nakai M., Okunuki K. Preparation of crystalline Pseudomonas cytochrome c-551 and its general properties Biochem. J. 77 1960 194 201
93. Matsuura Y., Takano T., Dickerson R.E. Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 Å resolution and comparison of the two redox forms J. Mol. Biol. 156 1982 389 409
94. 6 from the green alga Monoraphidium braunii crystallization and preminary diffraction studies Acta Crystallogr. D Biol. Crystallogr. 51 1995 232 234
95. 6 and comparison with plastocyanin Structure 3 1995 1159 1169
96. 553 from Desulfovibrio vulgaris with the class I cytochrome c family Proteins 24 1996 178 194
97. 552: a new highly thermostable cytochrome-c structure obtained by MAD phasing J. Mol. Biol. 271 1997 629 644
98. Baistrocchi P., Banci L., Bertini I., Turano P., Bren K.L., Gray H.B. Three-dimensional solution of Saccharomyces cerevisiae reduced iso-1-cytochrome c Biochemistry 35 1996 13788 13796
99. Yumoto I., Fukumori Y., Yamanaka T. Purification and characterization of two membrane-bound c-type cytochromes from a facultative alkalophilic Bacillus J. Biochem. 110 1991 267 273
100. 3, from alkalophilic Bacillus YN-2000 Can. J. Microbiol. 47 2001 1075 1081
101. Kassner R.J. A theoretical model for the effects of local nonpolar heme environments on the redox potential in cytochromes J. Am. Chem. Soc. 95 1973 2674 2677
102. Moore G.R., Pettigrew G.W., Pitt R.C., Williams R.J. pH dependence of the redox potential of Pseudomonas aeruginosa cytochrome c-551 Biochim. Biophys. Acta 590 1980 261 271
103. Leitch F.A., Moore G.R., Pettigrew G.W. Structural basis for the variation of pH-dependent redox potential of Pseudomonas cytochrome c-551 Biochemistry 23 1984 1831 1838
104. Coutinho I.B., Xavier A.V. Inorganic microbial sulfur metabolism Methods Enzymol. 234 1994 119 140
105. 3 Eur. J. Biochem. 141 1984 283 296
106. 3 from Desulfovibrio vulgaris Eur. J. Biochem. 241 1996 723 731
107. Xavier A.V. Energy transduction coupling mechanisms in multiredox center proteins J. Inorg. Biochem. 28 1986 239 243
108. 3 coupled to hydrogenase works as a 'proton thruster' in Desulfovibrio vulgaris J. Biol. Inorg. Chem. 2 1997 488 491
109. Murgida D.H., Hildebrandt P. Proton-coupled electron transfer of cytochrome c J. Am. Chem. Soc. 123 2001 4062 4068
110. Tokuda H., Unemoto T. A respiration-dependent primary sodium extrusion system functioning at alkaline pH in the marine bacterium Vibrio alginolyticus Biochem. Biophys. Res. Commun. 102 1981 265 271
111. + is translocated at NADH: quinone oxidoreductase segment in the respiratory chain of Vibrio alginolyticus J. Biol. Chem. 259 1984 7785 7790
112. Aono R., Ito M., Horikoshi K. Occurrence of teichurono peptide in cell walls of group 2 alkaliphilic Bacillus sp. J. Gen. Microbiol. 139 1993 2738 2744
113. Aono R., Ito M., Joblin K.N., Horikoshi K. A high cell wall negative charge is necessary for the growth of the alkaliphile Bacillus lentus C-125 at elevated pH Microbiology 141 1995 2955 2964
114. Aono R., Ito M., Machida T. Contribution of the cell wall component teichuronopeptide to pH homeostasis and alkaliphily in the alkaliphile Bacillus lentus C-125 J. Bacteriol. 181 1999 6600 6606
115. Gilmore R., Messner P., Guffanti A.A., Kent R., Scheberl A., Kendrick N., Krulwich T.A. Two-dimensional gel electrophoresis analyses of pH-dependent protein expression in facultatively alkaliphilic Bacillus pseudofirmus OF4 lead to characterization of an S-layer protein with a role in alkaliphily J. Bacteriol. 182 2000 5969 5981
116. de Vrij W., van den Burg B., Konings W.N. Spectral and potentiometric analysis of cytochromes from Bacillus subtilis Eur. J. Biochem. 166 1987 589 595
117. Riegler D., Shroyer L., Pokalsky C., Zaslavsky D., Gennis R., Prochaska L.J. Characterization of steady-state activities of cytochrome c oxidase at alkaline pH: mimicking the effect of K-channel mutations in the bovine enzyme Biochim. Biophys. Acta 1706 2005 126 133
118. Hisae N., Aizawa K., Koyama N., Sekiguchi T., Nosoh Y. Purification and properties of NADH dehydrogenase from an alkalophilic Bacillus Biophys. Acta 743 1983 232 238
119. Xu X.M., Koyama N., Cui M., Yamagishi A., Nosoh Y., Oshima T. Nucleotide sequence of the gene encoding NADH dehydrogenase from an alkalophilic, Bacillus sp. YN-1 J. Biochem. 109 1991 678 683
120. Collins M.D., Lund B.M., Farrow J.A.E., Schleifer K.H. Chemotaxonomic study of an alkalophilic bacterium, Exiguobacterium aurantiacum gen. nov., sp. nov. J. Gen. Microbiol. 129 1983 2037 2042
121. Mathrai I.M., Boone D.R., Mah R.A., Fox G.E., Lau P.P. Methanohalophilus zhilinae sp. nov., an alkaliphilic, halophilic, methylotrophic methanogen Int. J. Syst. Bacteriol. 38 1988 139 142
122. Li Y., Mandelco L., Wiegel J. Isolation and characterization of moderately thermophilic anaerobic alkaliphile, Clostridium paradoxum sp. nov. Int. J. Syst. Bacteriol. 43 1993 450 460
123. Sorkin D.Y., Muyzer G., Brinkhoff T., Kuenen J.G., Jetten M.S.M. Isolation and characterization of novel facultatively alkaliphilic Nitrobacter species, N. alkalicus sp. nov. Arch. Microbiol. 170 1998 345 352
124. Bryantseva I.A., Gorlenko V.M., Kompantseva E.I., Achenbach L.A., Madigan M.T. Heliorestis daurensis, gen. nov. sp. nov., an alkaliphilic rod-to-coiled-shaped phototrophic heliobacterium from a Siberian soda lake Arch. Microbiol. 172 1999 167 174
125. Lu J., Nogi Y., Takami H. Ocenobacillus iheyenisis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge FEMS Microbiol. Lett. 205 2001 291 297
126. Yumoto I., Yamazaki K., Hishinuma M., Nodasaka Y., Suemori A., Nakajima K., Inoue N., Kawasaki K. Pseudomonas alcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile isolated from seawater Int. J. Syst. Evol. Microbiol. 51 2001 349 355
127. Ntougias S., Russell N.J. Alkalibacterium olivoapovliticus gen. nov., sp. nov., a new obligately alkaliphilic bacterium isolated from edible-olive wash-waters Int. J. Syst. Evol. Microbiol. 51 2001 1161 1170
128. Yakimov M.M., Giuliano L., Chernikova T.N., Gentile G., Abraham W.-R., Lüsdorf H., Timmis K.N., Golyshin P.N. Alcalilimnicola halodurans gen. nov., sp. nov., analkaliphilic, moderately halophilic and extremely halotolerant bacterium, isolated from sediments of soda-depositing Lake Natron, East Africa Rift Valley Int. J. Syst. Evol. Microbiol. 51 2001 2133 2143
129. Takai K., Moser D.P., Onstott T.C., Spoelstra N., Pfiffner S.M., Dohnalkova A., Fredcikson J.K. Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South Africa gold mine Int. J. Syst. Evol. Microbiol. 51 2001 1245 1256
130. Yumoto I., Nakamura A., Iwata H., Kojima K., Kusumoto K., Nodasaka Y., Matsuyama H. Dietzia psychralcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile that grows on hydrocarbons Int. J. Syst. Evol. Microbiol. 52 2002 85 90
131. Belduz A.O., Dulger S., Demirbag Z. Anoxybacillus gonensis sp. nov., a moderately thermophilic, xylose-utilizing, edospore-forming Int. J. Syst. Evol. Microbiol. 53 2003 1315 1320
132. Ye Q., Roh Y., Carrol S.L., Blair B., Zhou J., Zhang C.L., Fields M.W. Alkaline anerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium Appl. Environ. Microbiol. 70 2004 5595 5602
133. Yumoto I., Hirota K., Nodasaka Y., Yokota Y., Hoshino T., Nakajima K. Alkalibacterium psychrotolerans sp. nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye Int. J. Syst. Evol. Microbiol. 54 2004 2379 2383